View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15501_high_5 (Length: 340)

Name: NF15501_high_5
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15501_high_5
NF15501_high_5
[»] chr6 (3 HSPs)
chr6 (113-322)||(12425662-12425873)
chr6 (208-257)||(32406993-32407042)
chr6 (72-109)||(12425923-12425960)
[»] chr5 (3 HSPs)
chr5 (211-288)||(6423993-6424070)
chr5 (180-257)||(42042143-42042220)
chr5 (207-263)||(33408169-33408225)
[»] chr8 (1 HSPs)
chr8 (192-257)||(30525261-30525326)
[»] chr4 (3 HSPs)
chr4 (179-280)||(36165839-36165940)
chr4 (192-250)||(54137261-54137319)
chr4 (182-244)||(582290-582352)
[»] chr7 (2 HSPs)
chr7 (209-269)||(8745849-8745909)
chr7 (211-297)||(36496221-36496307)
[»] chr3 (3 HSPs)
chr3 (184-269)||(12369762-12369847)
chr3 (210-251)||(20490964-20491005)
chr3 (179-243)||(22312323-22312387)
[»] chr2 (1 HSPs)
chr2 (179-227)||(36201980-36202028)
[»] chr1 (1 HSPs)
chr1 (205-265)||(13899937-13899997)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 113 - 322
Target Start/End: Complemental strand, 12425873 - 12425662
Alignment:
Q  113 cataatatatgcaaggattgaggtttgaactctggacacnnnnnnnnnn--gtcttttggtttcaggttccaatttccactttgcaatactcaactcgac 210  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12425873 cataatatatgcaaggattgaggtttgaactctggacaccaaaaaaaaacagtcttttggtttcaggttccaatttccactttgcaatactcaactcgac 12425774  T
Q  211 tctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgaggttgctgaaacaaatttataaatcgaacaacttcgaaacctg 310  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12425773 tctgataccatgttaaatgggattgaatctcatcacaaaaattagcttaaatgatgaggctgctgaaacaaatttataaatcgaacaacttcgaaacctg 12425674  T
Q  311 accaataacttt 322  Q
    ||||||||||||    
T  12425673 accaataacttt 12425662  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 32406993 - 32407042
Alignment:
Q  208 gactctgataccatgttaaatgagattgaatctcatcacaaaaactagct 257  Q
    |||||||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  32406993 gactctgataccatgttaaatgagtttggatctcatcccaaaagctagct 32407042  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 12425960 - 12425923
Alignment:
Q  72 aaaagcctttgttaaaaacatttatacctccgacaaac 109  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  12425960 aaaagcctttgttaaaaacatttatagctcctacaaac 12425923  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 6424070 - 6423993
Alignment:
Q  211 tctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgaggttgctgaaacaaatttata 288  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||| | | || ||||| |||||||    
T  6424070 tctgataccatgttaaataagattgaatctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttata 6423993  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 42042220 - 42042143
Alignment:
Q  180 ccaatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaaactagct 257  Q
    |||||| |||| | ||||| || ||| |||||||||||||||||||||| || ||| |||||||| ||||||||||||    
T  42042220 ccaattcccacatcgcaatccttaacccgactctgataccatgttaaataagtttggatctcatcccaaaaactagct 42042143  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 33408169 - 33408225
Alignment:
Q  207 cgactctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatg 263  Q
    ||||||||||||||||||||||||| |||||||||||| |||||  ||||| |||||    
T  33408169 cgactctgataccatgttaaatgagtttgaatctcatcccaaaagttagctcaaatg 33408225  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 30525326 - 30525261
Alignment:
Q  192 ttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaaactagct 257  Q
    ||||||| || ||||||||||||||||||||||||||| | ||| |||||||| ||||| ||||||    
T  30525326 ttgcaatccttaactcgactctgataccatgttaaatgtgcttgtatctcatcccaaaagctagct 30525261  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Original strand, 36165839 - 36165940
Alignment:
Q  179 tccaatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgaggttgctgaaa 278  Q
    |||||||||||| || |||| || ||| || ||| |||||||| ||||||||| ||| |||||||| |||||  ||||||||| ||||||| |||| |||    
T  36165839 tccaatttccacattacaattcttaacccggctccgataccatattaaatgagtttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaa 36165938  T
Q  279 ca 280  Q
    ||    
T  36165939 ca 36165940  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 54137261 - 54137319
Alignment:
Q  192 ttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaa 250  Q
    ||||||| || ||| |||||||||||||||||||| |||| |||||||||||| |||||    
T  54137261 ttgcaatccttaacccgactctgataccatgttaattgagcttgaatctcatcccaaaa 54137319  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 582352 - 582290
Alignment:
Q  182 aatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatc 244  Q
    |||| |||| |||||||  | ||| ||||||||||||||||||||||||  ||||||||||||    
T  582352 aattcccacattgcaatcttaaacccgactctgataccatgttaaatgaacttgaatctcatc 582290  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 8745849 - 8745909
Alignment:
Q  209 actctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgagg 269  Q
    ||||||||| ||||||||||||| ||| |||||||| |||||  ||||||||| |||||||    
T  8745849 actctgatatcatgttaaatgagcttggatctcatcccaaaagttagcttaaaggatgagg 8745909  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 36496221 - 36496307
Alignment:
Q  211 tctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgaggttgctgaaacaaatttataaatcgaaca 297  Q
    ||||||||||||| ||||| | |||||||||||| ||||| |||||| ||  ||||||| |||  ||||| ||||||| ||| ||||    
T  36496221 tctgataccatgtgaaatgggcttgaatctcatcccaaaagctagctcaatggatgagggtgcctaaacagatttatacatccaaca 36496307  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 12369847 - 12369762
Alignment:
Q  184 tttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgatgagg 269  Q
    |||||||||||||||  | ||| | ||||  ||| |||||| |||||| |||||||||||  |||||| ||||| |||||||||||    
T  12369847 tttccactttgcaattgttaacccaactcaaatatcatgttgaatgagcttgaatctcattccaaaaattagctcaaatgatgagg 12369762  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 20491005 - 20490964
Alignment:
Q  210 ctctgataccatgttaaatgagattgaatctcatcacaaaaa 251  Q
    |||||||||||||||||||||| ||| |||||||| ||||||    
T  20491005 ctctgataccatgttaaatgagcttggatctcatcccaaaaa 20490964  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 22312387 - 22312323
Alignment:
Q  179 tccaatttccactttgcaatactcaactcgactctgataccatgttaaatgagattgaatctcat 243  Q
    |||||||| ||| |||||||  | ||| ||||||||||||||||||||||  | |||||||||||    
T  22312387 tccaatttgcacattgcaatctttaacccgactctgataccatgttaaataggtttgaatctcat 22312323  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 36202028 - 36201980
Alignment:
Q  179 tccaatttccactttgcaatactcaactcgactctgataccatgttaaa 227  Q
    |||||||||||| ||| ||| || ||| |||||||||||||||||||||    
T  36202028 tccaatttccacattgtaattcttaacccgactctgataccatgttaaa 36201980  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 13899997 - 13899937
Alignment:
Q  205 ctcgactctgataccatgttaaatgagattgaatctcatcacaaaaactagcttaaatgat 265  Q
    ||||||| ||||| |||||||||||||||||||||| |||  ||||  ||||| |||||||    
T  13899997 ctcgactttgatatcatgttaaatgagattgaatcttatcctaaaagatagctcaaatgat 13899937  T

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