View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15501_low_1 (Length: 740)

Name: NF15501_low_1
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15501_low_1
NF15501_low_1
[»] chr1 (3 HSPs)
chr1 (382-723)||(31979066-31979411)
chr1 (318-373)||(43356449-43356506)
chr1 (311-373)||(44243879-44243944)
[»] chr4 (10 HSPs)
chr4 (311-372)||(22164260-22164324)
chr4 (309-373)||(24079830-24079896)
chr4 (309-373)||(11949753-11949820)
chr4 (309-373)||(54500573-54500640)
chr4 (309-373)||(10261759-10261825)
chr4 (309-373)||(21562630-21562696)
chr4 (309-373)||(26926700-26926766)
chr4 (309-373)||(43330151-43330217)
chr4 (309-373)||(51450217-51450283)
chr4 (326-372)||(19479468-19479516)
[»] chr7 (10 HSPs)
chr7 (23-89)||(24388236-24388302)
chr7 (312-373)||(27833391-27833455)
chr7 (32-84)||(40898781-40898834)
chr7 (326-373)||(45088898-45088946)
chr7 (309-373)||(20763159-20763225)
chr7 (309-373)||(29488725-29488791)
chr7 (309-373)||(33232387-33232453)
chr7 (309-373)||(34284529-34284595)
chr7 (309-372)||(19036093-19036158)
chr7 (309-372)||(20718478-20718543)
[»] chr3 (5 HSPs)
chr3 (309-373)||(32928578-32928644)
chr3 (328-373)||(7464481-7464528)
chr3 (309-369)||(21245797-21245860)
chr3 (309-373)||(916444-916510)
chr3 (309-373)||(38234928-38234994)
[»] scaffold1320 (1 HSPs)
scaffold1320 (311-370)||(1753-1814)
[»] scaffold0041 (1 HSPs)
scaffold0041 (32-84)||(67450-67503)
[»] chr8 (5 HSPs)
chr8 (311-370)||(15167056-15167117)
chr8 (309-373)||(20665353-20665419)
chr8 (309-373)||(30550716-30550782)
chr8 (309-373)||(44215465-44215531)
chr8 (311-373)||(19260569-19260634)
[»] chr5 (2 HSPs)
chr5 (309-373)||(15889415-15889482)
chr5 (309-373)||(37462116-37462182)
[»] chr2 (8 HSPs)
chr2 (309-373)||(23250310-23250377)
chr2 (309-373)||(27412826-27412893)
chr2 (318-373)||(30799080-30799136)
chr2 (309-373)||(3708698-3708764)
chr2 (309-373)||(11868652-11868718)
chr2 (309-373)||(35360045-35360111)
chr2 (311-373)||(25274819-25274884)
chr2 (309-370)||(346117-346181)
[»] chr6 (6 HSPs)
chr6 (309-373)||(247664-247730)
chr6 (309-373)||(12582219-12582285)
chr6 (309-365)||(33976249-33976307)
chr6 (328-373)||(11456366-11456412)
chr6 (333-373)||(17113575-17113616)
chr6 (309-370)||(20744142-20744206)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 382 - 723
Target Start/End: Complemental strand, 31979411 - 31979066
Alignment:
Q  382 cgtaattcaatcttataagtttttcaatatgcataacaacgaactaatttcgatttcacttggaagaagataattattttgattagcaacacttgctgcg 481  Q
    ||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  31979411 cgtaattcaattttctaagttttacaatatgcataacaacgtactaatttcgatttcacttggaagaagctaattattttgattagtaacacttgctgcg 31979312  T
Q  482 tttgaatgatatatgatttgaccatgttcataagtgaagataatttttactttataagttggtcttgtatatattgagttatgccttattcaaattctaa 581  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  31979311 tttgaatgatatatgatttgaccatgttcataagcgaagataatttttactttataagttggtcttgtatatattgagttagaccttagtcaaattctaa 31979212  T
Q  582 tatagtataaaaacttatttaagatttaatggacacttgctatcatatcatcactctaggaaccacgtatgaggtca-----cacatatccaatgtattt 676  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||     ||||| ||||||||||||    
T  31979211 tatagtataaaaacttatttaagattcaatggacacttgctatcatatcatcacttta-gaaccacgtacgaggtcagacttcacatgtccaatgtattt 31979113  T
Q  677 ataaatacattgtcaatgtatttataaataaagttaatcttattgtt 723  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  31979112 ataaaaacattgtcaatgtatttataaataaagttaatcttattgtt 31979066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 43356449 - 43356506
Alignment:
Q  318 agttggtagaacaatgcataatatacgtaagg--tcgggttcaaaccccgaccaccac 373  Q
    ||||||||| ||||||||||||||| ||||||  | | ||||||||||||||||||||    
T  43356449 agttggtaggacaatgcataatatatgtaaggtttggagttcaaaccccgaccaccac 43356506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 44243879 - 44243944
Alignment:
Q  311 ttagcttagttggtag-aacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||| ||||||||| |||||||||||||||| ||||||||  | ||||||||||| ||||||||    
T  44243879 ttagctcagttggtaggaacaatgcataatatatgtaaggtccagagttcaaaccccaaccaccac 44243944  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 22164324 - 22164260
Alignment:
Q  311 ttagcttagttggtag-aacaatgcataatatacgtaaggtc--gggttcaaaccccgaccacca 372  Q
    |||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||    
T  22164324 ttagcttagttggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 24079896 - 24079830
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | ||||||||||||||||||||    
T  24079896 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccgaccaccac 24079830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 11949820 - 11949753
Alignment:
Q  309 gcttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||| |||||||| | ||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  11949820 gcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaaccccgaccaccac 11949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 54500573 - 54500640
Alignment:
Q  309 gcttagcttagttggtaga-acaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||  |||||||||| | |||||||||    
T  54500573 gcttagctcagttggtagagacaatgcataatatatgtaaggtccggggttcaaacactgaccaccac 54500640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 10261825 - 10261759
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  10261825 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 10261759  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 21562630 - 21562696
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  21562630 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 21562696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 26926766 - 26926700
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  26926766 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 26926700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 43330151 - 43330217
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  43330151 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 43330217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 51450217 - 51450283
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  51450217 gcttagcttagttggtaggacaatgcataagatatgcaaggtccggagttcaaaccccggccaccac 51450283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 19479516 - 19479468
Alignment:
Q  326 gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccacca 372  Q
    ||||||||||||||||| | ||||||  |||||||||||||||||||||    
T  19479516 gaacaatgcataatatatgcaaggtccggggttcaaaccccgaccacca 19479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 24388236 - 24388302
Alignment:
Q  23 catgagtgatgtgttaaa-gtcttacattaaataagagatgacataaatatttgtttataagtaaaga 89  Q
    |||||||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||||||||||||    
T  24388236 catgagtgatgtgttaaaagtcttacattaa-tgagagatgacgtaaatatatgtttataagtaaaga 24388302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 27833455 - 27833391
Alignment:
Q  312 tagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    ||||| |||||||| | ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  27833455 tagctcagttggtaaggacaatgcataatatatgtaaggtccggggttcaaaccccgaccaccac 27833391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 40898834 - 40898781
Alignment:
Q  32 tgtgttaa-agtcttacattaaataagagatgacataaatatttgtttataagt 84  Q
    |||||||| |||||||||| |||||| ||||||||||||||| |||||||||||    
T  40898834 tgtgttaagagtcttacatcaaataaaagatgacataaatatgtgtttataagt 40898781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 45088898 - 45088946
Alignment:
Q  326 gaacaatgcataatatacgtaaggtcggg-ttcaaaccccgaccaccac 373  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  45088898 gaacaatgcataatatatgcaaggtcggggttcaaaccccgaccaccac 45088946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 20763159 - 20763225
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  20763159 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 20763225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 29488725 - 29488791
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  29488725 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 29488791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 33232453 - 33232387
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  33232453 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 33232387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 34284595 - 34284529
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  34284595 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 34284529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 19036158 - 19036093
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccacca 372  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| ||||||    
T  19036158 gcttagcttagttggtaggacaatgcataaaatatgcaaggtctggagttcaaaccccggccacca 19036093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 20718478 - 20718543
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccacca 372  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| ||||||    
T  20718478 gcttagcttagttggtaggacaatgcataaaatatgcaaggtctggagttcaaaccccggccacca 20718543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 32928644 - 32928578
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||| |||||||||||||||||||||||  |||| ||  | ||||||||||||||||||||    
T  32928644 gcttagcttaattggtagaacaatgcataatatatataagatctggagttcaaaccccgaccaccac 32928578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 7464528 - 7464481
Alignment:
Q  328 acaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  7464528 acaatgcataatatatgtaaggtccggggttcaaaccccgaccaccac 7464481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 21245797 - 21245860
Alignment:
Q  309 gcttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgacca 369  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||  ||||||||||| ||||||    
T  21245797 gcttagcttagttggtaaggacaatgcataatatatgtaaggtctggggttcaaacctcgacca 21245860  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 916444 - 916510
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  916444 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 916510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 38234994 - 38234928
Alignment:
Q  309 gcttagcttagttggtagaa-caatgcataatatacgtaaggtc-gggttcaaaccccgaccaccac 373  Q
    ||||| || ||||||||||| |||| |||||||||  ||||||| ||||||||||||||||||||||    
T  38234994 gcttaactcagttggtagaaacaattcataatataaataaggtctgggttcaaaccccgaccaccac 38234928  T

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Target: scaffold1320 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 1814 - 1753
Alignment:
Q  311 ttagcttagttggtag-aacaatgcataatatacgtaagg-tcgggttcaaaccccgaccac 370  Q
    |||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||    
T  1814 ttagctcagttggtaggaacaatgcataatatacataaggttagggttcaaaccccgaccac 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 67450 - 67503
Alignment:
Q  32 tgtgttaa-agtcttacattaaataagagatgacataaatatttgtttataagt 84  Q
    |||||||| |||||||||| |||||| ||||||||||||||| |||||||||||    
T  67450 tgtgttaagagtcttacatcaaataaaagatgacataaatatgtgtttataagt 67503  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 370
Target Start/End: Original strand, 15167056 - 15167117
Alignment:
Q  311 ttagcttagttggtag-aacaatgcataatatacgtaagg-tcgggttcaaaccccgaccac 370  Q
    |||||| ||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||    
T  15167056 ttagctcagttggtaggaacaatgcataatatacataaggttagggttcaaaccccgaccac 15167117  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 20665419 - 20665353
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  20665419 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 20665353  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 30550782 - 30550716
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  30550782 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 30550716  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 44215531 - 44215465
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  44215531 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 44215465  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 19260634 - 19260569
Alignment:
Q  311 ttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||| || | ||||||||||||||| ||||||||  |||||||||||||| |||||||    
T  19260634 ttagcttagttgatatgtacaatgcataatatatgtaaggtccggggttcaaaccccggccaccac 19260569  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 15889415 - 15889482
Alignment:
Q  309 gcttagcttagttggtaga-acaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||| |||||||||  ||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  15889415 gcttagctcagttggtagggacaatgcataatatatgcaaggtctagggttcaaaccccgaccaccac 15889482  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 37462116 - 37462182
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  37462116 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 37462182  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 23250377 - 23250310
Alignment:
Q  309 gcttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    ||||| || |||||||| ||||||||||||||||| | ||||||  ||||||||||||||||||||||    
T  23250377 gcttaactcagttggtaagaacaatgcataatatatgcaaggtccagggttcaaaccccgaccaccac 23250310  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 27412893 - 27412826
Alignment:
Q  309 gcttagcttagttggtaga-acaatgcataatatacgtaaggtcgg--gttcaaaccccgaccaccac 373  Q
    ||||| || |||||||||| ||||||||||||||| |||||||| |  ||||||||||||||||||||    
T  27412893 gcttaactcagttggtagagacaatgcataatatatgtaaggtctgttgttcaaaccccgaccaccac 27412826  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 30799136 - 30799080
Alignment:
Q  318 agttggtagaa-caatgcataatatacgtaaggtcgggttcaaaccccgaccaccac 373  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||  |||||||    
T  30799136 agttggtagaaacaatgcataatatatgtaaggtctggttcaaaccccagccaccac 30799080  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 3708698 - 3708764
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  3708698 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 3708764  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 11868718 - 11868652
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  11868718 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 11868652  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 35360111 - 35360045
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  35360111 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 35360045  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 25274884 - 25274819
Alignment:
Q  311 ttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||| |||||||| ||||||||||||||||| ||||||||  |||||| |||||||| ||||||    
T  25274884 ttagctcagttggtaagaacaatgcataatatatgtaaggtctggggttcgaaccccgaacaccac 25274819  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 346181 - 346117
Alignment:
Q  309 gcttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccac 370  Q
    |||||||| |||||||  ||| ||||||||||||| ||||||||  |||||||||||||||||||    
T  346181 gcttagctcagttggtttgaataatgcataatatatgtaaggtccagggttcaaaccccgaccac 346117  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 247664 - 247730
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  247664 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggagttcaaaccccggccaccac 247730  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 12582285 - 12582219
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccaccac 373  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  | |||||||||||| |||||||    
T  12582285 gcttagcttagttggtaggacaatgcataaaatatgcaaggtctggagttcaaaccccggccaccac 12582219  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 33976249 - 33976307
Alignment:
Q  309 gcttagcttagttggtagaacaatgcataatatacgtaaggtc--gggttcaaaccccg 365  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||  ||||||||||||||    
T  33976249 gcttagcttagttggtaggacaatgcataaaatatgcaaggtccggggttcaaaccccg 33976307  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 11456412 - 11456366
Alignment:
Q  328 acaatgcataatatacgtaaggtc-gggttcaaaccccgaccaccac 373  Q
    ||||||||||||||| |||||||| |||||||||||||| |||||||    
T  11456412 acaatgcataatatatgtaaggtcggggttcaaaccccggccaccac 11456366  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 17113616 - 17113575
Alignment:
Q  333 gcataatatacgtaaggtcg-ggttcaaaccccgaccaccac 373  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  17113616 gcataatatatgtaaggtcgaggttcaaaccccgaccaccac 17113575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 20744142 - 20744206
Alignment:
Q  309 gcttagcttagttggta-gaacaatgcataatatacgtaaggtc--gggttcaaaccccgaccac 370  Q
    |||||||| |||||||| | ||||||||||||||| | ||||||  |||||||||||||||||||    
T  20744142 gcttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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