View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15501_low_2 (Length: 634)

Name: NF15501_low_2
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15501_low_2
NF15501_low_2
[»] chr3 (2 HSPs)
chr3 (459-624)||(13219260-13219425)
chr3 (565-624)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (460-620)||(238285-238445)
scaffold0002 (553-620)||(240602-240669)
[»] chr5 (7 HSPs)
chr5 (1-87)||(26709990-26710076)
chr5 (1-87)||(26979724-26979810)
chr5 (565-624)||(39047942-39048001)
chr5 (104-171)||(26710126-26710194)
chr5 (104-171)||(26979860-26979928)
chr5 (414-458)||(26702828-26702872)
chr5 (414-458)||(26972561-26972605)
[»] chr8 (2 HSPs)
chr8 (290-423)||(29276066-29276199)
chr8 (414-458)||(9032725-9032769)
[»] chr4 (1 HSPs)
chr4 (529-624)||(18176963-18177058)
[»] chr7 (1 HSPs)
chr7 (533-621)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (565-624)||(15664-15723)
[»] scaffold0014 (2 HSPs)
scaffold0014 (392-458)||(82876-82942)
scaffold0014 (412-458)||(86994-87040)
[»] chr2 (1 HSPs)
chr2 (397-458)||(18738912-18738973)
[»] chr1 (1 HSPs)
chr1 (579-624)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 459 - 624
Target Start/End: Complemental strand, 13219425 - 13219260
Alignment:
Q  459 tgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaata 558  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13219425 tgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaata 13219326  T
Q  559 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219325 ccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 565 - 624
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  565 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 460 - 620
Target Start/End: Original strand, 238285 - 238445
Alignment:
Q  460 gaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaatac 559  Q
    ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| |    
T  238285 gaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattc 238384  T
Q  560 cgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 620  Q
    |||||||||||| |||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  238385 cgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 620
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  553 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 620  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr5 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26709990 - 26710076
Alignment:
Q  1 tttacagtaacgcttttacacagaatattatttagcccactataatactaaaatataaaaaatcgtccaagtgtaaacaatattgtt 87  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||    
T  26709990 tttacagtaacgcttttacacagaatattatttagcccataataatattaaaatatcaaaaatcgtccaagtgtaaacaatattgtt 26710076  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26979724 - 26979810
Alignment:
Q  1 tttacagtaacgcttttacacagaatattatttagcccactataatactaaaatataaaaaatcgtccaagtgtaaacaatattgtt 87  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||    
T  26979724 tttacagtaacgcttttacacagaatattatttagcccataataatattaaaatatcaaaaatcgtccaagtgtaaacaatattgtt 26979810  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 565 - 624
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  565 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 26710126 - 26710194
Alignment:
Q  104 ggtacacgtacacactagctcacaaccgcttaaacttgaaccc-aatatcatattcatgcatcattaat 171  Q
    |||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26710126 ggtacaagtacacaccggctcacaaccgcttaaacctgaacccaaatatcatattcatgcatcattaat 26710194  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 26979860 - 26979928
Alignment:
Q  104 ggtacacgtacacactagctcacaaccgcttaaacttgaaccc-aatatcatattcatgcatcattaat 171  Q
    |||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26979860 ggtacaagtacacaccggctcacaaccgcttaaacctgaacccaaatatcatattcatgcatcattaat 26979928  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 26702828 - 26702872
Alignment:
Q  414 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  26702828 ttgtataattagatgtggaattatcacaaataagaaattaaagag 26702872  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 26972561 - 26972605
Alignment:
Q  414 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  26972561 ttgtataattagatgtggaattatcacaaataagaaattaaagag 26972605  T

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Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 290 - 423
Target Start/End: Complemental strand, 29276199 - 29276066
Alignment:
Q  290 ggcttcacggacgactcgttaccattttcaggctaagcaattcttttaccatttatctagcaggactgcaaataaattgactaacaagtttcaacaaata 389  Q
    ||||||||||| | || ||||||||||||| | | |||||||| ||| ||||||||||||||||| |||||||||||||| |||||  |||||||||||     
T  29276199 ggcttcacggatgtctggttaccattttcacgttgagcaattcctttcccatttatctagcaggagtgcaaataaattgagtaacatatttcaacaaatg 29276100  T
Q  390 attaaattaaaatcctcaagattgttgtataatt 423  Q
    ||||||  |||||||| |||||||||||| ||||    
T  29276099 attaaacgaaaatccttaagattgttgtaaaatt 29276066  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 9032769 - 9032725
Alignment:
Q  414 ttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    ||||| ||||| ||| ||||| |||||||||||||||||||||||    
T  9032769 ttgtaaaattagatgtggaattatcacaaataagaaattaaagag 9032725  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 529 - 624
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  529 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 533 - 621
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  533 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 621  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 565 - 624
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  565 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 82942 - 82876
Alignment:
Q  392 taaattaaaatcctcaagattgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    |||||||||||||||||||||||||||||||||  || | ||| |||||| ||||||||||||||||    
T  82942 taaattaaaatcctcaagattgttgtataattaggtgtgcaattatcacagataagaaattaaagag 82876  T

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Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 87040 - 86994
Alignment:
Q  412 tgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    |||||||||||||  || ||||| |||||||||||||||||||||||    
T  87040 tgttgtataattaggtgtggaattatcacaaataagaaattaaagag 86994  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 18738912 - 18738973
Alignment:
Q  397 taaaatcctcaagattgttgtataattaaatgcggaatcatcacaaataagaaattaaagag 458  Q
    ||||||||||| | ||||||||||||||  || ||||| ||| |||||||||||||||||||    
T  18738912 taaaatcctcacggttgttgtataattaggtgtggaattatctcaaataagaaattaaagag 18738973  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  579 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 624  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

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