View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15501_low_4 (Length: 391)
Name: NF15501_low_4
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15501_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 33721399 - 33721774
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtatttccagggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33721399 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtatttccaaggaag |
33721498 |
T |
|
| Q |
101 |
ttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33721499 |
ttatagttgcttcaaatctttcagggatagtcacgagtattttctgaactattcttgaatcagataattcagaaccatgcaatcttactttgttagcaat |
33721598 |
T |
|
| Q |
201 |
gctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721599 |
gctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaatt |
33721698 |
T |
|
| Q |
301 |
ctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33721699 |
ctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
33721774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 26712297 - 26712373
Alignment:
| Q |
217 |
gcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
293 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
26712297 |
gcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
26712373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 20785898 - 20786274
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
20785898 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaagctttgacatgtccttggtattttccaaggaa |
20785997 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20785998 |
gtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaa |
20786097 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
20786098 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaat |
20786197 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20786198 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
20786274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 29470163 - 29469787
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
29470163 |
accttcagaccttatcgttcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaagctttgacatgtccttggtattttccaaggaa |
29470064 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29470063 |
gtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaa |
29469964 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29469963 |
tgttaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaat |
29469864 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29469863 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
29469787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 45998411 - 45998507
Alignment:
| Q |
197 |
caatgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
293 |
Q |
| |
|
||||||| | |||||| | |||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
45998411 |
caatgcttagaagtttgtctgcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
45998507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 9795058 - 9795134
Alignment:
| Q |
217 |
gcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccc |
293 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||||||| || | |||||||| || |||||||||| |
|
|
| T |
9795058 |
gcatactctttgattgtttctgactccttcatccgctgcatctcaaactccctgatcaaattcagcacttgcatccc |
9795134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Complemental strand, 29868450 - 29868075
Alignment:
| Q |
2 |
ccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
29868450 |
ccttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaagctttgacatgtccttggtattttccaaggaag |
29868351 |
T |
|
| Q |
101 |
ttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaat |
200 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29868350 |
tgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaat |
29868251 |
T |
|
| Q |
201 |
gctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
29868250 |
gctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagcgcttgcattcccctaatt |
29868151 |
T |
|
| Q |
301 |
ctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29868150 |
ctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
29868075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 626975 - 626599
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
626975 |
accttcagaccttatcattcttctttgttcttggccctgcatagcatttacaagctctcccacggtaagctttaacatgtcctttgtattttccaaggaa |
626876 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626875 |
gttatagttgcttcaaatctttcagggacagtcacaagtattttctgacctattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
626776 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
626775 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctccaatcaaattaagtgcttgcatccccctaat |
626676 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626675 |
tctttcatctccttcatattcaattttgaagatattccatatttcaaatgctgatttgatgatcataattctggtga |
626599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 21027079 - 21027455
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
21027079 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctccgccacggtaagctttgacatgtccttggtattttccaaggaa |
21027178 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21027179 |
gtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaa |
21027278 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
21027279 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcaaatcaaattaagcgcttgcattcccctaat |
21027378 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21027379 |
tctttcatctccttcatattcagttttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
21027455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 19965917 - 19965541
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
19965917 |
accttcagaccttatcattcttctttgttcttgggtctgcatagcatttacaagctccgccacggtaagctttgacatgtccttggtattttccaaggaa |
19965818 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19965817 |
gtgatggttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagacaattcagaaccaagcaatcttactttgttagcaa |
19965718 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
19965717 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctctaatcaaattaagcgcttgcattcccctaat |
19965618 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19965617 |
tctttcatctccttcatattcagttttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtga |
19965541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 252 - 374
Target Start/End: Original strand, 6367789 - 6367911
Alignment:
| Q |
252 |
ttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgct |
351 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6367789 |
ttgcatctcaaattctcgaatgaaattaagcgcttgcattcccctaattctttcatctccttcgtattcagttttgaggaaatttcatatttcaaatgct |
6367888 |
T |
|
| Q |
352 |
gatttgatgatcataattctggt |
374 |
Q |
| |
|
| ||||||| |||||||| |||| |
|
|
| T |
6367889 |
ggtttgatggtcataattttggt |
6367911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 28698612 - 28698988
Alignment:
| Q |
1 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctgccacggtaagctttaacatgtccttggtattt-ccagggaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
28698612 |
accttcagaccttatcattcttctttgttcttgggcctgcatagcatttacaagctctcccaacgtaagctttaacatgtccttggtattttccaaggaa |
28698711 |
T |
|
| Q |
100 |
gttatagttgcttcaaatctttcagggacagtcacgagtattttctgaactattcttgaatcagataattcagaaccaagcaatcttactttgttagcaa |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28698712 |
gttatagttgcttcaaatcttttagggatagtcacgagtattttctgaactattcttgaatcagataattcagaaccaaacaatcttactttgttagcaa |
28698811 |
T |
|
| Q |
200 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgcttgcatccccctaat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28698812 |
tgctaataagtttatttgcatactctttaattgtttcagactccttcatcttttgcatctcaaattctcgaatcaaattaagtgtttgcatccccctaat |
28698911 |
T |
|
| Q |
300 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtga |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
28698912 |
tctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggttataattatggtga |
28698988 |
T |
|
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