View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15501_low_8 (Length: 227)
Name: NF15501_low_8
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15501_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43742301 - 43742522
Alignment:
| Q |
1 |
ctgatcggcaagcttgtctgcatttcatggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaat |
100 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||| | ||| |
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| T |
43742301 |
ctgatcggcaagcttgtctgcacttcatgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaat |
43742400 |
T |
|
| Q |
101 |
agttggttcagtgttaattgtgcttaaacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatata |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43742401 |
aattggttcagtgttaattgtgcttaaacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatata |
43742500 |
T |
|
| Q |
201 |
aagtatcacaaaaattcatttt |
222 |
Q |
| |
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||||||||||| || ||||||| |
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| T |
43742501 |
aagtatcacaagaactcatttt |
43742522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43439769 - 43439990
Alignment:
| Q |
1 |
ctgatcggcaagcttgtctgcatttcatggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaat |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||| | ||| |
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| T |
43439769 |
ctgatcagcaagcttgtctgcacttcatgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaat |
43439868 |
T |
|
| Q |
101 |
agttggttcagtgttaattgtgcttaaacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatata |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43439869 |
aattggttcagtgttaattgtgcttaaacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatata |
43439968 |
T |
|
| Q |
201 |
aagtatcacaaaaattcatttt |
222 |
Q |
| |
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||||||||||| || ||||||| |
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| T |
43439969 |
aagtatcacaagaactcatttt |
43439990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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