View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15501_low_9 (Length: 205)
Name: NF15501_low_9
Description: NF15501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15501_low_9 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 44743366 - 44743528
Alignment:
| Q |
21 |
gttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgaga |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
44743366 |
gttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagtaaggtaatagatttctttattctcatggatggacttgggttcgaga |
44743465 |
T |
|
| Q |
121 |
aactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44743466 |
aactcttaacaccccaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
44743528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 13090483 - 13090649
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
13090483 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttgctaaagcaaggtaatcgatttctttattctcatggatggacttgggttc |
13090582 |
T |
|
| Q |
117 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13090583 |
gacaaactcttaacaccccatgtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
13090649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 15210351 - 15210514
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
15210351 |
atatgttatggggcagcgatgattgcatatgactatcacatgaagtacttactgaagcaagataatagatttctttattctcatggatggacttgggttc |
15210450 |
T |
|
| Q |
117 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtatt |
180 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
15210451 |
gagaaactcttaccaccccaggtgaaagttacaatatgtttaaaatggaaactcatgttgtatt |
15210514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 4527980 - 4527868
Alignment:
| Q |
71 |
aagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactc |
170 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
4527980 |
aagcaaggtaatagatttctttattctcatggatggacttgggttcgagaaattcttaacaccccaggtgaaagttacaatatgtttagaatgaaaactc |
4527881 |
T |
|
| Q |
171 |
atgctgtattgaa |
183 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4527880 |
atgctgtattgaa |
4527868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 14641933 - 14642072
Alignment:
| Q |
44 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
143 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14641933 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
14642032 |
T |
|
| Q |
144 |
gttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| ||||||| |
|
|
| T |
14642033 |
gttataacatgtttaggatggaatctcatgccatattgaa |
14642072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 22590645 - 22590723
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22590645 |
atatgttatggggcagcgatgattgcatatgactatcacatgaaatacttactaaaataaggtaatagatttctttatt |
22590723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 6578577 - 6578411
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
6578577 |
atatgttatggggcagcgatgattgcatatgactatcatatgaagtacttaatgaagcaaggtaatagatttctttattctcatggatggaattgggttc |
6578478 |
T |
|
| Q |
117 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6578477 |
gagaaactcttaacaccccaggtgaaagttataatatgtttagaatggaaactcatgttgtattgaa |
6578411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 38835278 - 38835439
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
38835278 |
atatgttatggggcagcgatgattgcatatgaatatcatataaagtacttactaaagcaaggtaatagatttctttattctcatggatggacttggattc |
38835377 |
T |
|
| Q |
117 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtat |
179 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38835378 |
gagaaactcttaacacc-gagatgaaagttataatatgtttagaatggaaactcatgctgtat |
38835439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 38318106 - 38317997
Alignment:
| Q |
50 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
149 |
Q |
| |
|
|||||||||||||| |||| || |||||||| | |||| |||||| ||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
38318106 |
tatcatatgaagtatttaccaaggcaaggtagcaaatttatttattcacatgaatggaattgggttcgagaaattcttaacaccccaggtaaaagttata |
38318007 |
T |
|
| Q |
150 |
atatgtttag |
159 |
Q |
| |
|
| |||||||| |
|
|
| T |
38318006 |
acatgtttag |
38317997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 25705689 - 25705857
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttact--aaagcaaggtaatagatttctttatttttatggatggacttgggt |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25705689 |
atatgttatggggcagctatgattgcatatgactatcacatgaagtacttactgaaaagcaaggtaatagatttctttattctcatggatggacttgggt |
25705788 |
T |
|
| Q |
115 |
tcgagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25705789 |
tcgagaaactcttaacaccccaggtgaaagttacaatatgtttagaatggaaactcatgctgtattgaa |
25705857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 36331908 - 36332069
Alignment:
| Q |
17 |
atatgttatggggcagcgatgattgcatatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttc |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36331908 |
atatgttatgggacagcgatgattgcatatgattatcatatgaagtacttactaaaacaaggtaatagatttttttattttcatggatggacttgggttc |
36332007 |
T |
|
| Q |
117 |
gagaaactcttaacacctcaggtgaaagttataatatgtttagaatggaaactcatgctgta |
178 |
Q |
| |
|
|||||||||||||| | ||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
36332008 |
gagaaactcttaacttcccaggtaaaagtcataatatgtttagaatggaaattcatgctgta |
36332069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 3590789 - 3590916
Alignment:
| Q |
50 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
3590789 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagttata |
3590888 |
T |
|
| Q |
150 |
atatgtttagaatggaaactcatgctgt |
177 |
Q |
| |
|
| |||||||| |||||| || ||||||| |
|
|
| T |
3590889 |
acatgtttaggatggaatctaatgctgt |
3590916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 9787002 - 9786875
Alignment:
| Q |
50 |
tatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttata |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
9787002 |
tatcatatgaagtatttactaaagcaaggtaacagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagttata |
9786903 |
T |
|
| Q |
150 |
atatgtttagaatggaaactcatgctgt |
177 |
Q |
| |
|
| |||||||| |||||| || ||||||| |
|
|
| T |
9786902 |
acatgtttaggatggaatctaatgctgt |
9786875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 4576068 - 4575929
Alignment:
| Q |
44 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
143 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4576068 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttcttgattctcgtggacagacttgggttcgagaaactcttaacactaggggtgaaa |
4575969 |
T |
|
| Q |
144 |
gttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
4575968 |
gttataatatgtttaggatggaatctcatgccatattgaa |
4575929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 7231433 - 7231572
Alignment:
| Q |
44 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
143 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7231433 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactagaggtgaaa |
7231532 |
T |
|
| Q |
144 |
gttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| ||||||| |
|
|
| T |
7231533 |
gttataacatgtttaggatggaatctcatgccatattgaa |
7231572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 183
Target Start/End: Complemental strand, 175359 - 175220
Alignment:
| Q |
44 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
143 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
175359 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
175260 |
T |
|
| Q |
144 |
gttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||| |||||||| |||||| ||||||| ||||||| |
|
|
| T |
175259 |
gttataacatgtttaggatggaatctcatgccatattgaa |
175220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 131859 - 131998
Alignment:
| Q |
44 |
tatgaatatcatatgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaa |
143 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
131859 |
tatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctagtggatggacttgggttcgagaaactcttaacactaggggtgaaa |
131958 |
T |
|
| Q |
144 |
gttataatatgtttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||| |||||||| |||||| ||| ||| ||||||| |
|
|
| T |
131959 |
gttataacatgtttaggatggaatctcgtgccatattgaa |
131998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 29565238 - 29565365
Alignment:
| Q |
56 |
atgaagtacttactaaagcaaggtaatagatttctttatttttatggatggacttgggttcgagaaactcttaacacctcaggtgaaagttataatatgt |
155 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| |
|
|
| T |
29565238 |
atgaagtacttaataaagaaatgtaatagatttctttattctcgtggatggacttgggttcgagaaactctaaacactagaagtgaaagttataacatgt |
29565337 |
T |
|
| Q |
156 |
ttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
|||| |||||| ||||||| ||||||| |
|
|
| T |
29565338 |
ttaggatggaatctcatgccatattgaa |
29565365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 26333669 - 26333641
Alignment:
| Q |
155 |
tttagaatggaaactcatgctgtattgaa |
183 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26333669 |
tttagaatggaaactcatgctgtattgaa |
26333641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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