View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15502_high_2 (Length: 320)

Name: NF15502_high_2
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15502_high_2
NF15502_high_2
[»] chr5 (14 HSPs)
chr5 (1-305)||(8527736-8528040)
chr5 (129-299)||(8534438-8534610)
chr5 (123-301)||(8640449-8640627)
chr5 (1-92)||(1601230-1601321)
chr5 (82-216)||(9075303-9075444)
chr5 (122-247)||(8643506-8643630)
chr5 (124-240)||(8636090-8636206)
chr5 (124-197)||(9002283-9002356)
chr5 (122-208)||(8549058-8549145)
chr5 (6-77)||(15618505-15618576)
chr5 (174-247)||(8677342-8677415)
chr5 (253-301)||(2846197-2846245)
chr5 (253-301)||(2858018-2858066)
chr5 (58-105)||(8534365-8534412)
[»] chr4 (1 HSPs)
chr4 (35-305)||(9441937-9442207)
[»] chr7 (3 HSPs)
chr7 (1-301)||(48362651-48362958)
chr7 (17-195)||(35777257-35777444)
chr7 (135-192)||(48362528-48362584)
[»] chr1 (3 HSPs)
chr1 (173-305)||(26324451-26324584)
chr1 (130-256)||(5129794-5129920)
chr1 (52-181)||(26324948-26325080)
[»] chr8 (1 HSPs)
chr8 (209-262)||(44438409-44438462)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 8527736 - 8528040
Alignment:
Q  1 aaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527736 aaatcacaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcac 8527835  T
Q  101 caccggaggaagaagtcaaaacatcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataaca 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527836 caccggaggaagaagtcaaaacatcattcaagatcttcatcttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataaca 8527935  T
Q  201 aagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaa 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8527936 aagtctaagtaacatacctaaaattgtaataagcaggggtcagaataccaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcgccaa 8528035  T
Q  301 actct 305  Q
    |||||    
T  8528036 actct 8528040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 129 - 299
Target Start/End: Original strand, 8534438 - 8534610
Alignment:
Q  129 caagatcttcattttcttcatgcaatttaata--tttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattg 226  Q
    ||||||||||||||||||||||||| |||| |  |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  8534438 caagatcttcattttcttcatgcaaattaaaaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattg 8534537  T
Q  227 taataagcaagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcacca 299  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8534538 taataagcaagggtcagaataacaatcaatacgaaagcagacgtactcttcttaggaagcaggttcttcacca 8534610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 123 - 301
Target Start/End: Original strand, 8640449 - 8640627
Alignment:
Q  123 atcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaa 222  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||  |||  ||||||||||||||||| | ||||||    
T  8640449 atcattcaagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaa 8640548  T
Q  223 attgtaataagcaagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaa 301  Q
    |||||| |||||| |||||| ||||||||||||| | |||  | ||||||||||||||  |||| ||  ||||||||||    
T  8640549 attgtagtaagcaggggtcaaaatacaaatcaatgcaaaaataaacgtactcttcttaacaagcgggtccttcaccaaa 8640627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1601321 - 1601230
Alignment:
Q  1 aaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 92  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601321 aaatcgcaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaa 1601230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 9075444 - 9075303
Alignment:
Q  82 tcttcaccaaaagcctcaccaccggaggaagaag-------tcaaaacatcattcaagatcttcattttcttcatgcaatttaatatttgcacacctata 174  Q
    |||||||||||||||||||||| |||||||||||       | || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  9075444 tcttcaccaaaagcctcaccactggaggaagaagatatttgttaagacatcattcaagatcttcattctcttcatgcaatttaaaatttgcacacctata 9075345  T
Q  175 taaaataacaccaatattacataacaaagtctaagtaacata 216  Q
    |||||||||| || ||||||| ||||||||||||||||||||    
T  9075344 taaaataacaacagtattacacaacaaagtctaagtaacata 9075303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 8643506 - 8643630
Alignment:
Q  122 catcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 221  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  8643506 catcattcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 8643604  T
Q  222 aattgtaataagcaagggtcagaata 247  Q
    ||||||| || |||||||||||||||    
T  8643605 aattgtagtatgcaagggtcagaata 8643630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 8636090 - 8636206
Alignment:
Q  124 tcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaa 223  Q
    |||||||||||||||||||||||||   ||||||| ||||||| |||||||||||||||| |||||||||| ||||| || || |||||  |||||||||    
T  8636090 tcattcaagatcttcattttcttcacttaatttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaa 8636189  T
Q  224 ttgtaataagcaagggt 240  Q
    ||||| |||||||||||    
T  8636190 ttgtattaagcaagggt 8636206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 9002283 - 9002356
Alignment:
Q  124 tcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacata 197  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||    
T  9002283 tcattcaagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattacata 9002356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 8549145 - 8549058
Alignment:
Q  122 catcattcaagatcttcattttcttcatgcaatttaata-tttgcacacctatataaaataacaccaatattacataacaaagtctaa 208  Q
    ||||||||||||||||  ||||||| ||||||||| | | ||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  8549145 catcattcaagatctttgttttctttatgcaattttaaactttgcacgcctatacaaaataacaccaatattacataacaaaggctaa 8549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 15618505 - 15618576
Alignment:
Q  6 acaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagct 77  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||| ||||||| ||||    
T  15618505 acaactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttattagct 15618576  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 8677342 - 8677415
Alignment:
Q  174 ataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaata 247  Q
    |||||||||||||||||||||| |||| || | ||||||||| |||||||||||| |||| | || ||||||||    
T  8677342 ataaaataacaccaatattacaaaacagagcccaagtaacattcctaaaattgtagtaaggacggatcagaata 8677415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 2846245 - 2846197
Alignment:
Q  253 caatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaa 301  Q
    |||| ||||| || |||||||||| ||||||||||||||||||||||||    
T  2846245 caatgcgaaaacaaacgtactcttattaggaagcaggctcttcaccaaa 2846197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 2858066 - 2858018
Alignment:
Q  253 caatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaa 301  Q
    |||| ||||| || |||||||||| ||||||||||||||||||||||||    
T  2858066 caatgcgaaaacaaacgtactcttattaggaagcaggctcttcaccaaa 2858018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 8534365 - 8534412
Alignment:
Q  58 gaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccg 105  Q
    |||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  8534365 gaaattccttctaatcagttgtactcttcaccaaaagcgtcagcaccg 8534412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 35 - 305
Target Start/End: Original strand, 9441937 - 9442207
Alignment:
Q  35 aacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagat 134  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9441937 aacataaccctgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaagtcaaaacatcattcaagat 9442036  T
Q  135 cttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagc 234  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442037 cttcattttcttcatgtaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaataagc 9442136  T
Q  235 aagggtcagaatacaaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactct 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442137 aagggtcagaataccaatcaatacgaaagcagacgtactcttcttaggaagcaggctcttcaccaaactct 9442207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 48362958 - 48362651
Alignment:
Q  1 aaatcacaactagccaaatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  48362958 aaatcacaactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaaggcctcac 48362859  T
Q  101 caccggaggaagaag-------tcaaaacatcattcaagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatatta 193  Q
    |||||||||||||||       ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||    
T  48362858 caccggaggaagaaggtatttgtcaaaccatcattcgagatcttcattttcttcatgtaatttaatatttgcacacctatat-aaataacacgaatatta 48362760  T
Q  194 cataacaaagtctaagtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaata-cgaaagcagacgtactcttcttaggaagcaggctc 292  Q
    ||||||| ||||| ||||||||| |||||||||||||| ||| ||||||||| || |||||| | ||||| ||||||||||||||||||||||  |||||    
T  48362759 cataacatagtcttagtaacataactaaaattgtaatacgcaggggtcagaaaaccaatcaaaagcgaaaacagacgtactcttcttaggaagagggctc 48362660  T
Q  293 ttcaccaaa 301  Q
    |||||||||    
T  48362659 ttcaccaaa 48362651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 35777257 - 35777444
Alignment:
Q  17 aatcataacttgtgatttaacataaccatgcctagtgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggagga-aga-- 113  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||||| |||| ||  || |||||||||| |||||||| ||||||||| |||| |||      
T  35777257 aatcataaattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaaagcgtcaccaccgaaggagagagg 35777356  T
Q  114 -----agtcaaaacatcattcaagatcttcattttcttcatgcaatttaata-tttgcacacctatataaaataacaccaatattaca 195  Q
          |||||  ||||||||||||||||||||| |||  |||| ||||| | |||||||  ||||| ||||||||||||||||||||    
T  35777357 atacttgtcaagtcatcattcaagatcttcatttacttactgcagtttaaaactttgcacgactatacaaaataacaccaatattaca 35777444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 48362584 - 48362528
Alignment:
Q  135 cttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatatt 192  Q
    |||| |||||||| ||||||||||  |||||||||||||||||| ||| |||||||||    
T  48362584 cttccttttcttcctgcaatttaaactttgcacacctatataaattaa-accaatatt 48362528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 26324584 - 26324451
Alignment:
Q  173 tataaaataacaccaatattacataacaaagtctaagt-aacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaaagcagacgta 271  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26324584 tataaaataacaccaatattacataacaaagtctaagttaacatacctaaaattgtaataagcaagggtcagaataccaatcaatacgaaaacagacgta 26324485  T
Q  272 ctcttcttaggaagcaggctcttcaccaaactct 305  Q
    |||||||| |||||| ||||||||||||||||||    
T  26324484 ctcttctttggaagccggctcttcaccaaactct 26324451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 5129794 - 5129920
Alignment:
Q  130 aagatcttcattttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaaaattgtaa 229  Q
    |||||||||||||  |||  |||  |||| ||||||||||||||||||||||| ||||||||||| |||||| | |||| |||  | ||||||||||||     
T  5129794 aagatcttcatttctttctcgcagattaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaattgtac 5129893  T
Q  230 taagcaagggtcagaatacaaatcaat 256  Q
    |||||| | |||||||||| |||||||    
T  5129894 taagcaggagtcagaataccaatcaat 5129920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 26325080 - 26324948
Alignment:
Q  52 tgtatggaaattccttcttatcagctgtactcttcaccaaaagcctcaccaccggaggaagaa-------gtcaaaacatcattcaagatcttcattttc 144  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||  ||       ||| | |||    |||||||||||||||||    
T  26325080 tgtatggaaattccttctaatcagttgtactcttcaccaaaagcctcaccacaggacgacaaaggtatttgtctataca----tcaagatcttcattttc 26324985  T
Q  145 ttcatgcaatttaatatttgcacacctatataaaata 181  Q
    ||||||||| || |  |||||||||||||||||||||    
T  26324984 ttcatgcaaattcaattttgcacacctatataaaata 26324948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 44438462 - 44438409
Alignment:
Q  209 gtaacatacctaaaattgtaataagcaagggtcagaatacaaatcaatacgaaa 262  Q
    |||||||||||||||||||| ||||||||||||| |||||  |||||| |||||    
T  44438462 gtaacatacctaaaattgtagtaagcaagggtcaaaataccgatcaatgcgaaa 44438409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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