View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15502_high_7 (Length: 231)
Name: NF15502_high_7
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15502_high_7 |
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| [»] scaffold0002 (5 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 405797 - 405585
Alignment:
| Q |
1 |
accgtccatttgtggtatcctcttctaaagtcggagcaaagcaagctctatatgaactagtcttcaggagtacaatctaaaatctcaagcaaacactatc |
100 |
Q |
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| T |
405797 |
accgtccatttatggtaacctcttctaaagtcggagcaaagcaagctctatatgaacttgtctacaggagtacactctaaaatctcaaacaaatactatc |
405698 |
T |
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| Q |
101 |
aaataatacaacataggttcataaatcatgttatattttaaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttt |
200 |
Q |
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| T |
405697 |
aaacaatacga-ataggttcataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttt |
405599 |
T |
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| Q |
201 |
tcaactctcctaac |
214 |
Q |
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|||||||||||||| |
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| T |
405598 |
tcaactctcctaac |
405585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 402375 - 402165
Alignment:
| Q |
4 |
gtccatttgtggtatcctcttctaaagtcggagcaaagcaagctctatatgaactagtcttcaggagtacaatctaaaatctcaagcaaacactatcaaa |
103 |
Q |
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| T |
402375 |
gtccatttgtggtagcctcatctaaagttggagcaaagcaagctctatatgaactagtctacaggagtacactctaaaatctcaagcgaacactatcaaa |
402276 |
T |
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| Q |
104 |
taatacaacataggttcataaatcatgttatattttaaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttca |
203 |
Q |
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| T |
402275 |
caatacgaaataggttcttaaaacatgttatattttgaataagatttgtaggaaatgagcccttcaattgagttgagaaatatgacgaatcaatttttca |
402176 |
T |
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| Q |
204 |
actctcctaac |
214 |
Q |
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| T |
402175 |
aatctcctaac |
402165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 189
Target Start/End: Complemental strand, 406039 - 405933
Alignment:
| Q |
82 |
atctcaagcaaacactatcaaataatacaacataggttcataaatcatgttatattttaaataagatttgtaggaaatgagcccctcaattgagttgaga |
181 |
Q |
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||||||| | |||||||||||| ||||| | ||||||| | || |||| || ||||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
406039 |
atctcaaacgaacactatcaaacaatacgaaataggtttacaagtcatattttatttgaa-tatgatttgtaggaaatgagcccctcaattgagttgaga |
405941 |
T |
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| Q |
182 |
aatatgac |
189 |
Q |
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| T |
405940 |
aatatgac |
405933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 402841 - 402770
Alignment:
| Q |
141 |
aataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaactctccta |
212 |
Q |
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| T |
402841 |
aatatgatttgtaggaaatgagaccctcaattgagttgagaaatatgagggttcaatttttcaaatctccta |
402770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 403327 - 403144
Alignment:
| Q |
7 |
catttgtggtatcctcttctaaagtcggagcaaagcaagctctatatgaactagtcttcaggagtacaatctaaaatctcaagcaaacactatcaaataa |
106 |
Q |
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|||||||| || |||||| |||||||| |||||||||| |||| ||| |||||| || ||||||| ||||| ||||||||| || ||||||| || |
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| T |
403327 |
catttgtgatagcctcttttaaagtcgaagcaaagcaatctctgtataaactagctgacaagagtacattctaagatctcaagcgaatgttatcaaacaa |
403228 |
T |
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| Q |
107 |
tacaacataggttcataaatcatgttatattttaaataagatttgtaggaaatgagcccctcaa-----ttgagttgagaaatat |
186 |
Q |
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| T |
403227 |
tacgaaataggtttataaatcatattttatttgaa-tatgatttgttggaaatgaacccctcaactcaattgagttgagaaatat |
403144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 42305377 - 42305341
Alignment:
| Q |
26 |
taaagtcggagcaaagcaagctctatatgaactagtc |
62 |
Q |
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| T |
42305377 |
taaagtcaaagcaaagcaagctctatatgaactagtc |
42305341 |
T |
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