View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15502_high_8 (Length: 222)
Name: NF15502_high_8
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15502_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 9500200 - 9500410
Alignment:
| Q |
9 |
gaagaatatgacaccgttagtgttatgaacacggcgatgacaacaaaagtcagaataaagagaatcgctataacgatcgacttaatattgcttgttagcc |
108 |
Q |
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| T |
9500200 |
gaagaacatgacaccgttagtgttatgaccacggctataacaacaaaagtcagaatggagagaatcgctataacgatcgacttaatattgcttgttagcc |
9500299 |
T |
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| Q |
109 |
atgcccacttttccatagaactactgcactcaaagcacattttattatattttagataatatataaactgttctccaaattaatacagtaatttattaga |
208 |
Q |
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| T |
9500300 |
atgcccacttttccatagaactactgcactcaaagcacatt---ttatattttagataatatataaactgttccccaaattaatacagtaatttattaga |
9500396 |
T |
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| Q |
209 |
aaaatgaaggaaaa |
222 |
Q |
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|||||||||||||| |
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| T |
9500397 |
aaaatgaaggaaaa |
9500410 |
T |
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