View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15502_low_1 (Length: 648)
Name: NF15502_low_1
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15502_low_1 |
 | |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 22589980 - 22589509
Alignment:
| Q |
11 |
ttattctctattatgtccacaac---aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22589980 |
ttattctctattatgtccacaaccaaaacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
22589881 |
T |
|
| Q |
108 |
gaattcctgctgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaattta |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
22589880 |
gaattcctgccgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatcgttttgctcttctctaaaaacaattta |
22589781 |
T |
|
| Q |
208 |
atatttgtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22589780 |
atatttgtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttat |
22589681 |
T |
|
| Q |
308 |
agaacagaaaagatggtggatccatctgtatgatggtatgaatt-annnnnnnnatatgctcattgctatgattcctttaaattgtagaatggaaaccaa |
406 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22589680 |
agaacagaaaagatggtggatccatatgtatgatggtatgaattaattttttttatatgctcattgctatgattcctttaaattgtagaatggaaaccaa |
22589581 |
T |
|
| Q |
407 |
gctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22589580 |
gctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
22589509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 493 - 632
Target Start/End: Complemental strand, 22589389 - 22589250
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22589389 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt |
22589290 |
T |
|
| Q |
593 |
gtaggtaattgtctttcatatctttgctttaaacacttgg |
632 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
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| T |
22589289 |
gtaggtaattgtctttcatatctttgcttcaaacacttgg |
22589250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Original strand, 30935093 - 30935556
Alignment:
| Q |
11 |
ttattctctattatgtccacaac---aacccccaatttatttcgggattggagaactttgaccggcgaccaccgcgttggaaacctcagcagccgtaccg |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
30935093 |
ttattctctattatgtccacaaccaaaacccccaatttatttcgggattcgagaacttttaccggcgaccaccgcgttggaaacctcagcagccgtatcg |
30935192 |
T |
|
| Q |
108 |
gaattcctgctgccgtgttagaaaactcatttgtagaattttatcctttttcttcatttgggtgagttctatctttttactcttctctaaaaacaattta |
207 |
Q |
| |
|
|||||||| | ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
30935193 |
gaattcctcc-gccgtgtcagaaaactcaattgtagcattttatcctttttcttcatttgggtgagttctatctttttgctcttctctaaaaacaattta |
30935291 |
T |
|
| Q |
208 |
atatttgtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatttat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
30935292 |
atatttgtgaaatgaatattgcatagaagaaatattagtatggaagaataagtagaagtggggaacgtgtttatgaatgtatgcagggctgtcaatacat |
30935391 |
T |
|
| Q |
308 |
agaacag-aaaagatggtggatccatctgtatgatggtatgaattannnnnnnnatatgctcattgctatgattcctttaaattgtagaatggaaaccaa |
406 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30935392 |
agaacagaaaaaaatggtggatccatctgtatgatggaacgaattaatttttttata-------tgctatgattcctttaaattgtagaatggaaaccaa |
30935484 |
T |
|
| Q |
407 |
gctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaatattgctatcactattag |
478 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
30935485 |
gctaactaatgtcttttttagtctaaagttagattttatggagtggtctctaaattttgctatcactattag |
30935556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 493 - 632
Target Start/End: Original strand, 30936267 - 30936406
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30936267 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgtt |
30936366 |
T |
|
| Q |
593 |
gtaggtaattgtctttcatatctttgctttaaacacttgg |
632 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
30936367 |
atagataattgtctttcatatctttgcttcaaacacttgg |
30936406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 496 - 632
Target Start/End: Complemental strand, 15437577 - 15437441
Alignment:
| Q |
496 |
ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgta |
595 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
15437577 |
ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttata |
15437478 |
T |
|
| Q |
596 |
ggtaattgtctttcatatctttgctttaaacacttgg |
632 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15437477 |
ggtaattgtctttcatatctttgcttcaaacacttgg |
15437441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 496 - 632
Target Start/End: Complemental strand, 15528881 - 15528745
Alignment:
| Q |
496 |
ctttgaagtctttcagtagcatttgattttagtgttgactctgtatgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttgta |
595 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
15528881 |
ctttgaaatctttcagtagcatttgattttagtgttgactctgtttgattttagtgttgactatgtagagaaatgtgaatttagaacaaaacttgttata |
15528782 |
T |
|
| Q |
596 |
ggtaattgtctttcatatctttgctttaaacacttgg |
632 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15528781 |
ggtaattgtctttcatatctttgcttcaaacacttgg |
15528745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 8834617 - 8834571
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
539 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8834617 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
8834571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 196 - 461
Target Start/End: Complemental strand, 34548354 - 34548115
Alignment:
| Q |
196 |
aaaaacaatttaatatttgtgaaatgaatattgcatagaagaaatattagtatggaagaataactagaagtgggg-aacgtgtttatgaatgtatgcagg |
294 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34548354 |
aaaaacagattaatatttgtgaaatgaatattgcatagaaaaaatattagtatggaagaataactaaaagtgggggaacgtgtttatgaatgtat----- |
34548260 |
T |
|
| Q |
295 |
gctgtcaatttatagaacagaaaagatggtggatccatctgtatgatggtatgaattannnnnnnnatatgctcattgctatgattcctttaaattgtag |
394 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||| | | |||||||||||||||||||||||| |
|
|
| T |
34548259 |
-------------agaacagaaaagatggtggatccatctg--tgatggaagaaattgatttcttga-------aatgctatgattcctttaaattgtag |
34548182 |
T |
|
| Q |
395 |
aatggaaaccaagctaactaatgtcttgtttagtctaaagttagattttatggagtggtctctaaat |
461 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34548181 |
aatggaaaccaagttaactaatgtcttttttagtctaaagttagattttatggagtggtctctaaat |
34548115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 4377065 - 4377019
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
539 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4377065 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
4377019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 7165 - 7211
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
539 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7165 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
7211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 20619 - 20665
Alignment:
| Q |
493 |
tatctttgaagtctttcagtagcatttgattttagtgttgactctgt |
539 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20619 |
tatctttgaaatctttcagtagcatttgattttagtgttgactctgt |
20665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 27308268 - 27308223
Alignment:
| Q |
36 |
cccccaatttatttcgggattggagaactttgaccggcgaccaccg |
81 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| | ||||||| |
|
|
| T |
27308268 |
cccccaatttatttcgggattgaagaactttcaccgtcaaccaccg |
27308223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 19278920 - 19278956
Alignment:
| Q |
45 |
tatttcgggattggagaactttgaccggcgaccaccg |
81 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
19278920 |
tattttgggattggagaactttcaccggcgaccaccg |
19278956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 13077503 - 13077463
Alignment:
| Q |
42 |
atttatttcgggattggagaactttgaccggcgaccaccgc |
82 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
13077503 |
atttattttgggatcggagaactttcaccggcgaccaccgc |
13077463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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