View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15502_low_2 (Length: 560)

Name: NF15502_low_2
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15502_low_2
NF15502_low_2
[»] chr1 (33 HSPs)
chr1 (1-545)||(32182069-32182615)
chr1 (268-344)||(44940342-44940419)
chr1 (280-344)||(23902071-23902136)
chr1 (281-325)||(27145741-27145785)
chr1 (283-344)||(34290237-34290299)
chr1 (280-344)||(39347971-39348036)
chr1 (293-345)||(5047146-5047198)
chr1 (285-344)||(26779934-26779994)
chr1 (270-332)||(28935869-28935933)
chr1 (269-320)||(48748308-48748360)
chr1 (267-320)||(6932951-6933006)
chr1 (293-340)||(12564517-12564564)
chr1 (293-344)||(37842373-37842424)
chr1 (283-344)||(7137005-7137067)
chr1 (293-343)||(43332486-43332536)
chr1 (266-341)||(3924628-3924705)
chr1 (280-336)||(14629970-14630027)
chr1 (280-344)||(25479582-25479647)
chr1 (291-344)||(28083306-28083359)
chr1 (280-344)||(31517744-31517809)
chr1 (291-340)||(32548647-32548696)
chr1 (285-345)||(47598430-47598491)
chr1 (281-344)||(219556-219620)
chr1 (291-339)||(5150943-5150991)
chr1 (426-466)||(7120079-7120119)
chr1 (285-344)||(11893602-11893661)
chr1 (285-344)||(16322850-16322910)
chr1 (279-338)||(28077072-28077132)
chr1 (267-321)||(29007706-29007762)
chr1 (280-343)||(30257685-30257749)
chr1 (280-335)||(37593688-37593744)
chr1 (293-325)||(44032017-44032049)
chr1 (293-329)||(44936621-44936657)
[»] chr7 (16 HSPs)
chr7 (293-344)||(44151498-44151549)
chr7 (267-344)||(39345472-39345551)
chr7 (293-344)||(44241860-44241911)
chr7 (280-344)||(2825235-2825300)
chr7 (280-344)||(24363605-24363670)
chr7 (293-345)||(12792581-12792633)
chr7 (293-336)||(12792642-12792685)
chr7 (293-344)||(20881654-20881705)
chr7 (300-351)||(40439048-40439099)
chr7 (280-338)||(9050642-9050700)
chr7 (297-343)||(48917368-48917414)
chr7 (280-344)||(4966157-4966222)
chr7 (293-326)||(5017958-5017991)
chr7 (267-338)||(7244687-7244760)
chr7 (295-344)||(39334194-39334243)
chr7 (296-336)||(12792519-12792559)
[»] chr4 (25 HSPs)
chr4 (267-344)||(29263371-29263450)
chr4 (285-344)||(49219140-49219200)
chr4 (293-344)||(47800624-47800675)
chr4 (266-338)||(23819096-23819170)
chr4 (296-344)||(8422860-8422908)
chr4 (426-466)||(32066510-32066550)
chr4 (280-344)||(42121489-42121553)
chr4 (280-340)||(52735127-52735187)
chr4 (293-344)||(11158375-11158426)
chr4 (280-338)||(53673662-53673721)
chr4 (283-344)||(17822872-17822934)
chr4 (280-341)||(17884072-17884134)
chr4 (279-340)||(35405952-35406014)
chr4 (291-344)||(2996574-2996627)
chr4 (293-342)||(4798584-4798633)
chr4 (280-344)||(7694014-7694079)
chr4 (293-326)||(14011253-14011286)
chr4 (293-338)||(18628561-18628606)
chr4 (283-320)||(20105438-20105475)
chr4 (298-343)||(29778797-29778842)
chr4 (163-200)||(45927359-45927396)
chr4 (280-336)||(47145971-47146028)
chr4 (280-331)||(5131254-5131306)
chr4 (296-336)||(36048542-36048582)
chr4 (280-315)||(43824313-43824349)
[»] chr2 (18 HSPs)
chr2 (263-344)||(29316761-29316844)
chr2 (293-344)||(43985021-43985072)
chr2 (295-344)||(44644279-44644328)
chr2 (271-344)||(16867740-16867815)
chr2 (281-338)||(35379021-35379079)
chr2 (280-345)||(43911003-43911069)
chr2 (426-479)||(28933740-28933793)
chr2 (293-344)||(6988116-6988167)
chr2 (293-344)||(7871644-7871695)
chr2 (291-341)||(1810668-1810718)
chr2 (295-344)||(1742052-1742101)
chr2 (163-204)||(7871649-7871690)
chr2 (280-344)||(35485918-35485983)
chr2 (293-338)||(36852479-36852524)
chr2 (280-344)||(2410050-2410114)
chr2 (281-344)||(9174816-9174880)
chr2 (265-349)||(12289793-12289880)
chr2 (293-325)||(43259854-43259886)
[»] chr8 (15 HSPs)
chr8 (293-342)||(4762512-4762561)
chr8 (281-344)||(9956819-9956883)
chr8 (293-344)||(7918791-7918842)
chr8 (297-339)||(33553246-33553288)
chr8 (280-336)||(42215086-42215143)
chr8 (293-357)||(27028819-27028883)
chr8 (280-343)||(38421266-38421330)
chr8 (293-344)||(39561559-39561610)
chr8 (294-336)||(11494155-11494197)
chr8 (291-344)||(1640367-1640420)
chr8 (280-344)||(28769343-28769408)
chr8 (283-323)||(30918135-30918176)
chr8 (266-317)||(41606892-41606945)
chr8 (282-317)||(8060697-8060733)
chr8 (281-320)||(11000581-11000621)
[»] chr5 (17 HSPs)
chr5 (293-344)||(17368677-17368728)
chr5 (271-344)||(33533533-33533608)
chr5 (280-344)||(17258887-17258952)
chr5 (280-339)||(37611219-37611279)
chr5 (280-339)||(37787949-37788009)
chr5 (280-326)||(12521547-12521594)
chr5 (293-339)||(12242728-12242774)
chr5 (285-338)||(18906349-18906403)
chr5 (280-317)||(36638775-36638813)
chr5 (293-343)||(40205092-40205142)
chr5 (280-344)||(1084125-1084190)
chr5 (291-344)||(5284464-5284517)
chr5 (280-344)||(11707056-11707121)
chr5 (266-344)||(2568659-2568739)
chr5 (281-344)||(4014429-4014493)
chr5 (113-153)||(10391399-10391439)
chr5 (278-325)||(28413286-28413334)
[»] chr6 (13 HSPs)
chr6 (301-343)||(13907849-13907891)
chr6 (293-351)||(26694872-26694930)
chr6 (280-320)||(6536972-6537013)
chr6 (295-339)||(2205610-2205654)
chr6 (280-343)||(4420645-4420709)
chr6 (293-344)||(25100044-25100095)
chr6 (426-477)||(31461596-31461647)
chr6 (298-344)||(31812036-31812082)
chr6 (293-341)||(5564146-5564194)
chr6 (280-339)||(7931730-7931790)
chr6 (286-342)||(29837095-29837151)
chr6 (285-313)||(33787997-33788025)
chr6 (291-351)||(34430477-34430537)
[»] chr3 (9 HSPs)
chr3 (280-344)||(36887505-36887570)
chr3 (265-344)||(52619004-52619085)
chr3 (293-344)||(21367668-21367719)
chr3 (293-335)||(482810-482852)
chr3 (266-326)||(36139897-36139959)
chr3 (280-317)||(45432943-45432981)
chr3 (293-342)||(27792875-27792924)
chr3 (285-344)||(33965497-33965558)
chr3 (296-344)||(47904084-47904132)


Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 32182615 - 32182069
Alignment:
Q  1 tccatgttgcatgaccctattacaaagttattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgca 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32182615 tccatgttgcatgaccctattacaaaattattacaataacactataagttatgtttagattgacttatttgaacttgcatagtgacataacacatatgca 32182516  T
Q  101 aacgtgaagctatttggaagagcttataaaaacaatttatgacatgtatattatgnnnnnnnagcttatttccataaactcttcataagagcttctgaaa 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   | |||       ||||||||||||||||||||||||||||||||||||||    
T  32182515 aacgtgaagctatttgaaagagcttataaaaacaatttatgacatgtccgt-atgtttttttagcttatttccataaactcttcataagagcttctgaaa 32182417  T
Q  201 acagtctatgacattccatatgnnnnnnncatcttatttccataaactcttgaagagatcttacaaaaacagtttatgaatgttcataagtt-ttttcag 299  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32182416 acagtctatgacattccatatgtttttttcatcttatttccataaactcttgaagagatcttacaaaaacagtttatgaatgttcataagtttttttcag 32182317  T
Q  300 cttatttccataagctcttcaagatagattttgaaaacaacttatgacatattcacaagnnnnnnnnnnnaacttattttaataaggtctccataatata 399  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  32182316 cttatttccttaagctcttcaagatagattttgaaaacaacttatgacatattcacaag-ttttttttttaacttattttaataaggtctccataatata 32182218  T
Q  400 acttatgaaaacaacttattacttacatcttttgttatataagtagtttatacatatgcacttatacagtaagtgcttg---tactactataagaaaaac 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||     
T  32182217 acttatgaaaacaacttattacttacatcttttgttatataagtagtttatacatatgcacttatacagtaagtgcttgtactactactataagaaaaaa 32182118  T
Q  497 cattaatcataaatttcagaatagtgaagaatctttaaaatattgaaat 545  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32182117 cattaatcataaatttcagaatggtgaagaatctttaaaatattgaaat 32182069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 44940419 - 44940342
Alignment:
Q  268 aacagtttatga-atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||| || |||| ||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||    
T  44940419 aacagtttacgacatgtccataagttttttcagcttatttccacaacctcttcaggatagattatgaaaacaacttat 44940342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 23902071 - 23902136
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| |||||||| ||||||||||| |||||||||||||  ||||||| |||||||||||||||||    
T  23902071 atgtgcataagttgttttcagcttacttccataagctctctaagatagcttttgaaaacaacttat 23902136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 27145741 - 27145785
Alignment:
Q  281 tgttcataagttttttcagcttatttccataagctcttcaagata 325  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  27145741 tgttcataagttttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 34290299 - 34290237
Alignment:
Q  283 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| |||||||||||||| |||||| |||||||||||| || |||||||| |||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttat 34290237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 39347971 - 39348036
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| |||||||| ||||||||||||||||||||||| | || ||||| || ||||||||||||||    
T  39347971 atgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttat 39348036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 5047198 - 5047146
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 345  Q
    |||||||||||||||||||||||||||| ||||| || |||||| | ||||||    
T  5047198 ttttcagcttatttccataagctcttcatgatagcttatgaaaaaagcttatg 5047146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 26779934 - 26779994
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||||| ||||||| |||||| |||||||||||| || ||||||||||||||    
T  26779934 cataagttgttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttat 26779994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 28935869 - 28935933
Alignment:
Q  270 cagtttatga-atgttcataagttttttc-agcttatttccataagctcttcaagatagattttg 332  Q
    |||||||||| |||| ||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  28935869 cagtttatgacatgtccataagttttttttagcttatttccataagctcttcaggatagcttttg 28935933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 48748308 - 48748360
Alignment:
Q  269 acagtttatgaatgttcataagtt-ttttcagcttatttccataagctcttca 320  Q
    |||||||||  | ||||||||||| ||||||||||||||||||||||||||||    
T  48748308 acagtttatacaagttcataagttgttttcagcttatttccataagctcttca 48748360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 6932951 - 6933006
Alignment:
Q  267 aaacagtttatga-atgttcataagttt-tttcagcttatttccataagctcttca 320  Q
    ||||||||||||| |||||||||||||  |||||| ||||||||||||||||||||    
T  6932951 aaacagtttatgatatgttcataagttagtttcagtttatttccataagctcttca 6933006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 12564517 - 12564564
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaac 340  Q
    ||||||||||||||||||||| ||| |||||||| || ||||||||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaac 12564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 37842373 - 37842424
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||  ||||| |||||||||||| || ||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaaaacaacttat 37842424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 7137005 - 7137067
Alignment:
Q  283 ttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| |||||||||||||| |||||| ||| |||||||| || |||||||| |||||    
T  7137005 ttcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 7137067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 343
Target Start/End: Complemental strand, 43332536 - 43332486
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    ||||||||||||||  |||||||||||||||||| || |||||||| ||||    
T  43332536 ttttcagcttattttaataagctcttcaagatagcttatgaaaacagctta 43332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 3924705 - 3924628
Alignment:
Q  266 aaaacagtttatgaa-tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaact 341  Q
    |||||| |||||||| |||| ||||||| ||||| |||||||||||||| ||||||| ||||| || | |||||||||    
T  3924705 aaaacaatttatgaaatgtttataagttgttttcggcttatttccataaactcttcaggatagcttataaaaacaact 3924628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 14629970 - 14630027
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||| ||||||||||||||||||||  ||| |||||||| || ||||||    
T  14629970 atgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaa 14630027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 25479647 - 25479582
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||| |||||||||||||| ||||||||||  | ||||| || ||||||||||||||    
T  25479647 atgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttat 25479582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 28083306 - 28083359
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||||| ||||||||||| | |||||||| ||| || |||||||    
T  28083306 ttttttcagcttattttcataagctctttaggatagattatgataataacttat 28083359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 31517744 - 31517809
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| | |||||||||||||| |||||||||| ||||| ||||| |||| ||| |||||    
T  31517744 atgttcataagctgttttcagcttattttcataagctctccaagacagattatgaagacagcttat 31517809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 32548647 - 32548696
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaac 340  Q
    |||||||| |||||||||||||||||  |||||||| || ||||||||||    
T  32548647 ttttttcaacttatttccataagctccccaagatagcttatgaaaacaac 32548696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 47598430 - 47598491
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 345  Q
    |||||||| |||||||||| || ||||||||||| || ||||| || |||||||||||||||    
T  47598430 cataagttgttttcagcttgttgccataagctctccaggatagcttatgaaaacaacttatg 47598491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 219556 - 219620
Alignment:
Q  281 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| | ||||||||| |||||||||||||||||| || || || || |||||||||||    
T  219556 tgttcataagctgttttcagctcatttccataagctcttcaggacagcttatgtaaacaacttat 219620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 5150991 - 5150943
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    |||||||| |||||||| |||||||||||| ||||| || |||||||||    
T  5150991 ttttttcaacttatttctataagctcttcatgatagcttatgaaaacaa 5150943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 466
Target Start/End: Complemental strand, 7120119 - 7120079
Alignment:
Q  426 atcttttgttatataagtagtttatacatatgcacttatac 466  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  7120119 atcttttgttatataaatagtttatatataagcacttatac 7120079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 11893602 - 11893661
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||||||||||||||||||| |||||||| |||| || || |||||||||||    
T  11893602 cataagttgttttcagcttatttccataaactcttcaaaatagcttatg-aaacaacttat 11893661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 16322910 - 16322850
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||| |||||||||||||||||||||||| ||||  | |||||||| |||||    
T  16322910 cataagttgtttttagcttatttccataagctcttcaaaatagcctatgaaaacagcttat 16322850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 28077072 - 28077132
Alignment:
Q  279 aatgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    |||||||||||||| ||||||||||||||| |||||||||  || |||| || ||||||||    
T  28077072 aatgttcataagttgttttcagcttatttcaataagctctctaaaatagcttatgaaaaca 28077132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 29007706 - 29007762
Alignment:
Q  267 aaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaa 321  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||| ||||||| |||||    
T  29007706 aaacaatttatgatatgttcataagttgttttcagcttatttcgataagcttttcaa 29007762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 30257749 - 30257685
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    ||||||||||| | ||||||||||||||| |||||| || || ||||| || |||||||||||||    
T  30257749 atgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaactta 30257685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 37593688 - 37593744
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaa 335  Q
    ||||||||||| | |||||||||||||| |||||||||||||| |||| || |||||    
T  37593688 atgttcataagctgttttcagcttattttcataagctcttcaaaatagcttatgaaa 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 44032017 - 44032049
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagata 325  Q
    ||||||||| |||||||||||||||||||||||    
T  44032017 ttttcagctaatttccataagctcttcaagata 44032049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 44936621 - 44936657
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagatt 329  Q
    ||||| || ||||||||||||||||||||||||||||    
T  44936621 ttttctgcctatttccataagctcttcaagatagatt 44936657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 44151498 - 44151549
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||    
T  44151498 ttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttat 44151549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 39345551 - 39345472
Alignment:
Q  267 aaacagtttatga-atgttcataagttt-tttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||| |||| ||||||||  |||||||||||||||||||| || ||| ||||| ||||||||||| |||||    
T  39345551 aaacagtttatgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagcttttgaaaacagcttat 39345472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 44241911 - 44241860
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||| ||||||| |||||||||| || ||||||||||||||    
T  44241911 ttttcagcttatttctataagctattcaagatagcttatgaaaacaacttat 44241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 2825235 - 2825300
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||| ||||||||||||||||||||| |||  | ||||| || ||||||||||||||    
T  2825235 atgttcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttat 2825300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 24363605 - 24363670
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| |||||||| |||||||||||||||||||| |||| || ||||| || ||||||||||||||    
T  24363605 atgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttat 24363670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 12792581 - 12792633
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 345  Q
    |||||||||||||| ||||||||||||||||||| || |||||| | ||||||    
T  12792581 ttttcagcttattttcataagctcttcaagatagcttatgaaaatagcttatg 12792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 12792642 - 12792685
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||||||||| |||||||||||||| || ||||||    
T  12792642 ttttcagcttatttccatatgctcttcaagatagcttatgaaaa 12792685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 20881654 - 20881705
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||| |||||| |||| ||||||| || ||||||||||||||    
T  20881654 ttttcagcttattttcataagttctttaagatagtttatgaaaacaacttat 20881705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 40439099 - 40439048
Alignment:
Q  300 cttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 351  Q
    ||||||||||||||||||||| ||||| |  |||||||||||||| ||||||    
T  40439099 cttatttccataagctcttcaggatagctaatgaaaacaacttataacatat 40439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 338
Target Start/End: Complemental strand, 9050700 - 9050642
Alignment:
Q  280 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    |||||||||| |||||||||||||||| || ||| ||| |||||||| || ||||||||    
T  9050700 atgttcataatttttttcagcttattttcacaagttctccaagatagtttatgaaaaca 9050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 48917368 - 48917414
Alignment:
Q  297 cagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    |||||||||| |||||||||| |||||||| || |||||||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaacaactta 48917414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 4966222 - 4966157
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||| | || |||||||| |||||    
T  4966222 atgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttat 4966157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 5017958 - 5017991
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatag 326  Q
    ||||||||||||||||||||||| ||||||||||    
T  5017958 ttttcagcttatttccataagcttttcaagatag 5017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 338
Target Start/End: Complemental strand, 7244760 - 7244687
Alignment:
Q  267 aaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    ||||| ||||||| ||| ||||||||| |||||||||||||| |||||||||| ||| |||| || ||||||||    
T  7244760 aaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagcttatgaaaaca 7244687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 39334243 - 39334194
Alignment:
Q  295 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||||||||  || ||||| ||||||||||| |||||    
T  39334243 ttcagcttatttccataagctcgccaggatagcttttgaaaacagcttat 39334194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 12792519 - 12792559
Alignment:
Q  296 tcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    |||||||||||| |||||||||||||||||| || ||||||    
T  12792519 tcagcttatttcaataagctcttcaagatagcttatgaaaa 12792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 29263450 - 29263371
Alignment:
Q  267 aaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||| ||||||| || ||||| || ||||||||||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaacttat 29263371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 49219200 - 49219140
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| || ||||||||||||||    
T  49219200 cataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttat 49219140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 47800675 - 47800624
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||| ||||||||||||||||||| || |||||||| |||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttat 47800624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 23819170 - 23819096
Alignment:
Q  266 aaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    ||||||| |||||| |||| |||||||| |||||| |||||||| |||||||||||||||||| || ||||||||    
T  23819170 aaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaaca 23819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 8422860 - 8422908
Alignment:
Q  296 tcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  8422860 tcagcttatttgcataaactctccaagatagattgtgaaaacaacttat 8422908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 32066510 - 32066550
Alignment:
Q  426 atcttttgttatataagtagtttatacatatgcacttatac 466  Q
    ||||||||||||| |||||||||||||||| ||||||||||    
T  32066510 atcttttgttataaaagtagtttatacataagcacttatac 32066550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 42121553 - 42121489
Alignment:
Q  280 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| | |||||||||||||||| ||| ||| |||||||| |  ||||||||||||||    
T  42121553 atgttcataagctgtttcagcttatttccacaagttctccaagatagctcatgaaaacaacttat 42121489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 52735187 - 52735127
Alignment:
Q  280 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaac 340  Q
    |||| |||| ||| ||| ||||||||||||||||||||||||||||| ||  |||||||||    
T  52735187 atgtccatatgttattttagcttatttccataagctcttcaagatagcttacgaaaacaac 52735127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 11158375 - 11158426
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||| |||||||  ||||||| || ||||||||||||||    
T  11158375 ttttcagcttatttccacaagctctctaagatagcttatgaaaacaacttat 11158426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 53673662 - 53673721
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    |||| |||||||| |||||||||||||| |||||||||| |||||||| || ||||||||    
T  53673662 atgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaaca 53673721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 17822872 - 17822934
Alignment:
Q  283 ttcataag-ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||||| ||||||||| |||||| ||| |||||||| || ||||||||||||||    
T  17822872 ttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttat 17822934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 17884134 - 17884072
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaact 341  Q
    ||||||||||||| ||||||||| |||| |||||||||| ||| |||| || |||||||||||    
T  17884134 atgttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaact 17884072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 35406014 - 35405952
Alignment:
Q  279 aatgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaac 340  Q
    |||||||||||| | ||||||||||| ||||||||||||| || ||||  |||||||||||||    
T  35406014 aatgttcataagctgttttcagcttacttccataagctctccaggataacttttgaaaacaac 35405952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 2996627 - 2996574
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| ||||||| |||| ||||| |||||||| || ||||||||||||||    
T  2996627 ttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttat 2996574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 4798584 - 4798633
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 342  Q
    |||| ||||||||| |||||||||| |||||||| || ||||||||||||    
T  4798584 ttttgagcttatttgcataagctctccaagatagcttatgaaaacaactt 4798633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 7694014 - 7694079
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||| |||||||||||||||||||| |||| || ||||  || |||||||| |||||    
T  7694014 atgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttat 7694079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 14011286 - 14011253
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatag 326  Q
    ||||||||||||||||||||||||| ||||||||    
T  14011286 ttttcagcttatttccataagctctccaagatag 14011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 18628561 - 18628606
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    ||||||||||||||||||||||||| |||||||  || ||||||||    
T  18628561 ttttcagcttatttccataagctctccaagataacttatgaaaaca 18628606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 20105438 - 20105475
Alignment:
Q  283 ttcataagttttttcagcttatttccataagctcttca 320  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  20105438 ttcataagctttttcagcttatttacataagctcttca 20105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 29778842 - 29778797
Alignment:
Q  298 agcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    ||||||||| ||||||||||||||| ||| || |||||||||||||    
T  29778842 agcttattttcataagctcttcaaggtagcttatgaaaacaactta 29778797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 45927396 - 45927359
Alignment:
Q  163 agcttatttccataaactcttcataagagcttctgaaa 200  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  45927396 agcttatttccataaactctccataatagcttctgaaa 45927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 47146028 - 47145971
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||| || || ||||||    
T  47146028 atgttcataagttgttttcaccttattttcataagctcttcaagacagtttatgaaaa 47145971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 5131254 - 5131306
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagatttt 331  Q
    |||| |||||||| ||||||||||||||||||||||||| || ||||| ||||    
T  5131254 atgtccataagttgttttcagcttatttccataagctctccaggatagctttt 5131306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 36048582 - 36048542
Alignment:
Q  296 tcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||||||||||||  ||||||| |||||||||    
T  36048582 tcagcttatttccataagctctctaagatagcttttgaaaa 36048542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 43824349 - 43824313
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagct 315  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43824349 atgttcataagttgttttcagcttatttccataagct 43824313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 29316761 - 29316844
Alignment:
Q  263 acaaaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| |  |||||||| |||||    
T  29316761 acaaaaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttat 29316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 43985021 - 43985072
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaacttat 43985072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 44644328 - 44644279
Alignment:
Q  295 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  44644328 ttcagcttattttcataagctcttcaagatagtttttgaaaacagcttat 44644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 16867815 - 16867740
Alignment:
Q  271 agtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||| || |||||||||| |||||| |||||||||||||||||| |||||||| || |||||||| |||||    
T  16867815 agtttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttat 16867740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 35379021 - 35379079
Alignment:
Q  281 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 43911003 - 43911069
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatg 345  Q
    ||||||||||||| |||||||||||||  || ||||| | |||||||| ||||||||||||||||||    
T  43911003 atgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaacaacttatg 43911069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 479
Target Start/End: Complemental strand, 28933793 - 28933740
Alignment:
Q  426 atcttttgttatataagtagtttatacatatgcacttatacagtaagtgcttgt 479  Q
    |||||||||||||||| ||| ||||||||  ||||||||| |||||||||||||    
T  28933793 atcttttgttatataaatagcttatacatgagcacttatatagtaagtgcttgt 28933740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 6988167 - 6988116
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||| |||||||| |||| ||||||||||||| || ||||||||||||||    
T  6988167 ttttcatcttatttctataaactcttcaagatagcttatgaaaacaacttat 6988116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 7871695 - 7871644
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||||||||||||||| | || || |||||||| |||||    
T  7871695 ttttcagcttatttccataagctcttcaaaagagcttatgaaaacagcttat 7871644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 1810718 - 1810668
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaact 341  Q
    |||||||||||||||| ||||| ||||||||||||| || | |||||||||    
T  1810718 ttttttcagcttattttcataaactcttcaagatagcttataaaaacaact 1810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 1742052 - 1742101
Alignment:
Q  295 ttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| ||||||||||||| ||||||| |||||||| |||||||| |||||    
T  1742052 ttcaacttatttccataaactcttcatgatagattatgaaaacagcttat 1742101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 7871690 - 7871649
Alignment:
Q  163 agcttatttccataaactcttcataagagcttctgaaaacag 204  Q
    ||||||||||||||| ||||||| |||||||| |||||||||    
T  7871690 agcttatttccataagctcttcaaaagagcttatgaaaacag 7871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 35485983 - 35485918
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| | ||||||||| ||||||||| |||||||| ||||| || | ||||||||||||    
T  35485983 atgttcataagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaacttat 35485918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 36852524 - 36852479
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    ||||||| ||||||||||||||||| |||||||| || ||||||||    
T  36852524 ttttcagattatttccataagctctccaagatagcttatgaaaaca 36852479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 2410050 - 2410114
Alignment:
Q  280 atgttcataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||  | ||||||||||||||||||||||||| || |||| | | || |||||||||||    
T  2410050 atgttcatagctattttcagcttatttccataagctctacaggataaaatatgcaaacaacttat 2410114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 9174880 - 9174816
Alignment:
Q  281 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| | |||||||||||||| ||||||||||  ||||||| || |||||||| |||||    
T  9174880 tgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaaacagcttat 9174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 12289880 - 12289793
Alignment:
Q  265 aaaaacagtttatga--atgttcataag-ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacat 349  Q
    |||||||||||||||  || |||||||| |||||||| ||||||| |||||| ||| ||| ||| ||| | |||||||||||| ||||    
T  12289880 aaaaacagtttatgacaatattcataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataacat 12289793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 325
Target Start/End: Complemental strand, 43259886 - 43259854
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagata 325  Q
    |||| ||||||||||||||||||||||||||||    
T  43259886 tttttagcttatttccataagctcttcaagata 43259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 4762561 - 4762512
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 342  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  4762561 ttttcagcttatttacataagctcttcaagatagcttatgaaaacaactt 4762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 9956819 - 9956883
Alignment:
Q  281 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||  |||||||||||||| |||||| ||| ||||||||||| ||||||||||||||    
T  9956819 tgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaacaacttat 9956883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 7918791 - 7918842
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||| ||||||| |||||||| || ||||||||||||||    
T  7918791 ttttcagcttatttccacaagctctacaagatagcttatgaaaacaacttat 7918842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 33553288 - 33553246
Alignment:
Q  297 cagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  33553288 cagcttatttccataagctcttcaagatagcttatgaaaacaa 33553246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 42215086 - 42215143
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||| || ||||||    
T  42215086 atgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaaa 42215143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 27028883 - 27028819
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatattcacaa 357  Q
    |||||||||||||| |||||||||| |||||||| || |||||||| |||||  ||||| |||||    
T  27028883 ttttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaa 27028819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 38421330 - 38421266
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    |||| |||||||| ||||||||||| || || ||| |||||||||||| ||||||||||||||||    
T  38421330 atgtccataagttgttttcagcttacttacacaagatcttcaagatagcttttgaaaacaactta 38421266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 39561559 - 39561610
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||||||||||||| |||| ||||| ||  |||||||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttat 39561610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 11494197 - 11494155
Alignment:
Q  294 tttcagcttatttccataagctcttcaagatagattttgaaaa 336  Q
    ||||||||||||| ||||||||||||||||||| || ||||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttatgaaaa 11494155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 1640367 - 1640420
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||| |||||||||||||||||||||| || |||| || |||||||| |||||    
T  1640367 tttttccagcttatttccataagctcttaaatatagcttatgaaaacagcttat 1640420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 28769343 - 28769408
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||| |||||||| |||||||||||||||||||| |||| ||| |||| || |||||||| |||||    
T  28769343 atgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttat 28769408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 30918176 - 30918135
Alignment:
Q  283 ttcataagtt-ttttcagcttatttccataagctcttcaaga 323  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  30918176 ttcataagttgttttcagcttatttccataagctctccaaga 30918135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 41606892 - 41606945
Alignment:
Q  266 aaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctct 317  Q
    ||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||    
T  41606892 aaaacagcttatgacatgttcaaaagttgttttcagcttatttccataagctct 41606945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 8060733 - 8060697
Alignment:
Q  282 gttcataagtt-ttttcagcttatttccataagctct 317  Q
    ||||||||||| |||||||||||||||||||||||||    
T  8060733 gttcataagttattttcagcttatttccataagctct 8060697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 11000581 - 11000621
Alignment:
Q  281 tgttcataagtttt-ttcagcttatttccataagctcttca 320  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  11000581 tgttcataagttgtcttcagcttatttccataagctcttca 11000621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 17368728 - 17368677
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||||||||| |||| |||||||| || ||||||||||||||    
T  17368728 ttttcagcttatttccataacctctccaagatagcttatgaaaacaacttat 17368677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 33533533 - 33533608
Alignment:
Q  271 agtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||| || |||||||||| |||||| |||||||||||||||||| |||||||| || |||||||| |||||    
T  33533533 agtttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaacaccttat 33533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 17258887 - 17258952
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| | |||||||||||||| ||||||||||||| ||||| || |||||||| |||||    
T  17258887 atgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 37611219 - 37611279
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    ||||||||||| | ||||||| ||||||||||||||||| |||||||| || |||||||||    
T  37611219 atgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 37787949 - 37788009
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    ||||||||||| | ||||||| ||||||||||||||||| |||||||| || |||||||||    
T  37787949 atgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 12521594 - 12521547
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatag 326  Q
    ||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  12521594 atgttcataagctgttttcagcttatttccataagctcttcaaaatag 12521547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 12242728 - 12242774
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    ||||||||||| ||||||||||||| |||||||| || |||||||||    
T  12242728 ttttcagcttacttccataagctctccaagatagcttatgaaaacaa 12242774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 18906403 - 18906349
Alignment:
Q  285 cataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaaca 338  Q
    |||||||| ||||||||||||||| ||||||| |||||||||| || ||||||||    
T  18906403 cataagttgttttcagcttatttcgataagcttttcaagatagcttatgaaaaca 18906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 36638813 - 36638775
Alignment:
Q  280 atgttcataag-ttttttcagcttatttccataagctct 317  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  36638813 atgttcataagcttttttcagcttatttccataagctct 36638775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 40205092 - 40205142
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    ||||||||||||||| ||||||||| || ||||| || |||||||||||||    
T  40205092 ttttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 1084125 - 1084190
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||| |||| ||||||||||||||||||||||| ||||  || |||||||| |||||    
T  1084125 atgttcatgagttgtttttagcttatttccataagctcttcatgatatgttatgaaaacagcttat 1084190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 5284464 - 5284517
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||||| ||| ||||||||| |||||  | ||||||||||||||    
T  5284464 ttttttcagcttattttcattagctcttcatgatagcctatgaaaacaacttat 5284517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 11707121 - 11707056
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||| ||||||| |||||||||||||| || ||||||| |||||||| || |||||||| |||||    
T  11707121 atgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttat 11707056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 2568739 - 2568659
Alignment:
Q  266 aaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||| |||||| || |||||||||| |||| ||||||||| ||| |||||| || ||||| || ||||||||||||||    
T  2568739 aaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttat 2568659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 4014429 - 4014493
Alignment:
Q  281 tgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||| | |||||||||||||| |||||| ||| |||||||| || |||||||| |||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 10391439 - 10391399
Alignment:
Q  113 tttggaagagcttataaaaacaatttatgacatgtatatta 153  Q
    |||||||||| ||||||||||| |||||||||||| |||||    
T  10391439 tttggaagagtttataaaaacactttatgacatgtctatta 10391399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 28413286 - 28413334
Alignment:
Q  278 gaatgttcataagtt-ttttcagcttatttccataagctcttcaagata 325  Q
    ||||||||||||| | |||||||||||||||||||| |||| |||||||    
T  28413286 gaatgttcataagctgttttcagcttatttccataaactctccaagata 28413334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 13907891 - 13907849
Alignment:
Q  301 ttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  13907891 ttattttcataagctcttcaagatagcttttgaaaacaactta 13907849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 26694930 - 26694872
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 351  Q
    |||||||||||||| |||||| |||||||||||| || ||||||||| |||| ||||||    
T  26694930 ttttcagcttattttcataagttcttcaagatagtttatgaaaacaatttataacatat 26694872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 6537013 - 6536972
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttca 320  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  6537013 atgttcataagttgttttcagcttatttccataagctcttca 6536972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 2205610 - 2205654
Alignment:
Q  295 ttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  2205610 ttcagcttatttccataagctctccaagatagcttatgaaaacaa 2205654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 4420709 - 4420645
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaactta 343  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||||| ||  ||||| ||||||    
T  4420709 atgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaataactta 4420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 25100095 - 25100044
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||| |||||||| |||||||||| ||||||| || ||||||||||||||    
T  25100095 ttttcaacttatttctataagctctttaagatagcttatgaaaacaacttat 25100044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 31461647 - 31461596
Alignment:
Q  426 atcttttgttatataagtagtttatacatatgcacttatacagtaagtgctt 477  Q
    ||||||||||||| || ||| ||||||||| ||||||||||| |||||||||    
T  31461647 atcttttgttatagaaatagcttatacataagcacttatacaataagtgctt 31461596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 31812036 - 31812082
Alignment:
Q  298 agcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||| |||||||||| |||||||| || ||||||||||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaacaacttat 31812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 5564146 - 5564194
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaact 341  Q
    |||||||||||||| ||||| |||||||||| || || |||||||||||    
T  5564146 ttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 7931730 - 7931790
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaa 339  Q
    |||||| |||||| |||||||||||||||| ||||||||  | ||||| ||||||||||||    
T  7931730 atgttcttaagttgttttcagcttatttccgtaagctctgtaggatagcttttgaaaacaa 7931790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 29837095 - 29837151
Alignment:
Q  286 ataagttttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 342  Q
    ||||||| |||||||| |||| ||||||||||||| ||||| || |||||| |||||    
T  29837095 ataagttgtttcagctaattttcataagctcttcaggatagtttatgaaaataactt 29837151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 33788025 - 33787997
Alignment:
Q  285 cataagttttttcagcttatttccataag 313  Q
    |||||||||||||||||||||||||||||    
T  33788025 cataagttttttcagcttatttccataag 33787997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 34430477 - 34430537
Alignment:
Q  291 ttttttcagcttatttccataagctcttcaagatagattttgaaaacaacttatgacatat 351  Q
    |||||||||||||||| |||||  ||| |||||||| || |||||||| ||||| ||||||    
T  34430477 ttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatat 34430537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 36887570 - 36887505
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||| | |||||||||||||| |||||| |||||||||| | || ||||||||||||||    
T  36887570 atgttcataagatgttttcagcttattttcataagttcttcaagatggcttatgaaaacaacttat 36887505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 52619085 - 52619004
Alignment:
Q  265 aaaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||| ||||||| ||||||||||| | |||||| ||||||| || |||||||||||||||| || |||||||| |||||    
T  52619085 aaaaacaatttatgacatgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttat 52619004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 21367719 - 21367668
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||||||||| |||||| ||| |||||||| || ||||||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttat 21367668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 482810 - 482852
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaa 335  Q
    |||||||||||||||||||| ||||||||||||| || |||||    
T  482810 ttttcagcttatttccataaactcttcaagatagtttatgaaa 482852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 36139959 - 36139897
Alignment:
Q  266 aaaacagtttatga-atgttcataagtt-ttttcagcttatttccataagctcttcaagatag 326  Q
    ||||||| |||||| ||||||| ||| | |||||||||||||| |||||||||||||||||||    
T  36139959 aaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaagatag 36139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 45432943 - 45432981
Alignment:
Q  280 atgttcataagtt-ttttcagcttatttccataagctct 317  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  45432943 atgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 27792924 - 27792875
Alignment:
Q  293 ttttcagcttatttccataagctcttcaagatagattttgaaaacaactt 342  Q
    ||||||||||||||| ||||||||| || ||||| || ||||||||||||    
T  27792924 ttttcagcttatttctataagctctacatgatagtttatgaaaacaactt 27792875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 33965497 - 33965558
Alignment:
Q  285 cataagtt-ttttcagcttattt-ccataagctcttcaagatagattttgaaaacaacttat 344  Q
    |||||||| |||||||||| ||| |||||||||||||||||||| || |||||||| |||||    
T  33965497 cataagttattttcagctttttttccataagctcttcaagatagcttatgaaaacatcttat 33965558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 47904084 - 47904132
Alignment:
Q  296 tcagcttatttccataagctcttcaagatagattttgaaaacaacttat 344  Q
    ||||||||||||| ||||||||||| ||||| || ||||||| ||||||    
T  47904084 tcagcttatttccgtaagctcttcacgatagcttatgaaaaccacttat 47904132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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