View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15502_low_3 (Length: 495)
Name: NF15502_low_3
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15502_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 36312321 - 36312799
Alignment:
| Q |
1 |
atatgaattcaacatctccactaaccgagcagtacaatgcatttgtttatcatcagggtattcttcaaattctcccattagaagaatctttctcaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312321 |
atatgaattcaacatctccactaaccgagcagtacaatgcatttgtttatcatcagggtattcttcaaattctcccattagaagaatctttctcaaggaa |
36312420 |
T |
|
| Q |
101 |
tctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaagacaaattgggaggcaaaatctttaactcatgtacactattataaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312421 |
tctcttgacagagaaacaatatgcagaaaagcagacatagcatcagccaatgaagataaattgggaggcaaaatctttaactcatgtacactattataaa |
36312520 |
T |
|
| Q |
201 |
gcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagccaaaacaagaataccaacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36312521 |
gcttctcattgatcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagccaaaacaggaataccaacaat |
36312620 |
T |
|
| Q |
301 |
ggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgctcttcatttctagcttcttcataggattcctccccgatgcgatttctcaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36312621 |
ggatttgtcaatcttagaaagaagtgagtgagactcaaacaacttatgctcttcatttctagcttcttcataggattcctccccgatgcgatttctcaca |
36312720 |
T |
|
| Q |
401 |
caaacatagcccaaaccaatgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
479 |
Q |
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| T |
36312721 |
caaacatagcccaaaccaatgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
36312799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 13 - 471
Target Start/End: Original strand, 36289850 - 36290308
Alignment:
| Q |
13 |
catctccactaaccgagcagtacaatgcatttgtttatcatcagggtattcttcaaattctcccattagaagaatctttctcaaggaatctcttgacaga |
112 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| || || || |||||||| ||||| || || || | |||||||||||| | | |||||||| |||| | |
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| T |
36289850 |
catctcgactaatcgagcagtgcaatgcatgtgcttgtcctcagggtactcttcgaaatcgcctgtgagaagaatctttttgagagaatctctagacaaa |
36289949 |
T |
|
| Q |
113 |
gaaacaatatgcagaaaagcagacatagcatcagccaatgaagacaaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattga |
212 |
Q |
| |
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|| |||||||| ||||||| |||||||||||| | ||||| ||||| | ||| ||| ||| |||||||| | || || | |||||||||||| | |
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| T |
36289950 |
ccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctctaactcatttgcattagaagcaagcttctcattaa |
36290049 |
T |
|
| Q |
213 |
tcttcttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagccaaaacaagaataccaacaatggatttgtcaat |
312 |
Q |
| |
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||||||| || ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |||||| ||||||||||||||| ||||||||| |
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| T |
36290050 |
tcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagctaaaacaggaataccaacaatggttttgtcaat |
36290149 |
T |
|
| Q |
313 |
cttagaaagaagtgagtgagactcaaacaacttatgctcttcatttctagcttcttcataggattcctccccgatgcgatttctcacacaaacatagccc |
412 |
Q |
| |
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||||||||||||||||||||||||||||| ||| | ||||| |||||| |||||||||| || || || || || |||| |||||| ||||| || |
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| T |
36290150 |
cttagaaagaagtgagtgagactcaaacagcttttcttcttccagtctagcatcttcataggtctcatctccaattcggtttcgcacacagacataacct |
36290249 |
T |
|
| Q |
413 |
aaaccaatgttaacatcatcagcagttactttctccaacaaaccttcaggtgatttatc |
471 |
Q |
| |
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| ||| ||||||||||||||||| || || ||||||||||| |||||||| |||||||| |
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|
| T |
36290250 |
agaccgatgttaacatcatcagcggtaaccttctccaacaatccttcaggagatttatc |
36290308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 36304785 - 36304850
Alignment:
| Q |
5 |
gaattcaacatctccactaaccgagcagtacaatgcatttgtttatcatcagggtattcttcaaat |
70 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36304785 |
gaattcaacatgtccactaaccgagccgtacaatgcatttgtttatcatcagggtattcttcaaat |
36304850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 15997323 - 15997268
Alignment:
| Q |
424 |
aacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
479 |
Q |
| |
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||||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| |
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|
| T |
15997323 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttg |
15997268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 33579675 - 33579730
Alignment:
| Q |
424 |
aacatcatcagcagttactttctccaacaaaccttcaggtgatttatcagcctttg |
479 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||| | ||||||| |||||||| |
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|
| T |
33579675 |
aacatcatcagcagtaactttctcaaacaatccttcaagagatttatgagcctttg |
33579730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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