View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15502_low_7 (Length: 258)
Name: NF15502_low_7
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15502_low_7 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 36495 - 36743
Alignment:
| Q |
1 |
tcattctctctcatattcttttctgagagttccccattcacatggcttcattaaaatatatatttatggtcaacgattcaaaatgagagttccactagct |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36495 |
tcattctctcttatattcttttctgagagttccccattcacattgcttcattaaaatatatatttatggtcaacgattcaaaatgagagttccactagct |
36594 |
T |
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| Q |
101 |
tatctgttttcttgagataaaactaatagaaatagaagaaagtctaacactttatgnnnnnnntgggagaaaccatttctgaagcttcatcctcagcatc |
200 |
Q |
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| T |
36595 |
tatctgttttcttgagataaaactaatcgaaatagaaaaaagtctaacactttgtgaaaaaaatgggagaaaccatttctgaagcttcatcctcagaatc |
36694 |
T |
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| Q |
201 |
taaatt----------gaagatagtttctacctttatatacatcctcaa |
239 |
Q |
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| T |
36695 |
taaattgaagaatcaagaagatagtttctacctttatatacatcctcaa |
36743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9230629 - 9230877
Alignment:
| Q |
1 |
tcattctctctcatattcttttctgagagttccccattcacatggcttcattaaaatatatatttatggtcaacgattcaaaatgagagttccactagct |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230629 |
tcattctctcttatattcttttctgagagttccccattcacattgcttcattaaaatatatatttatggtcaacgattcaaaatgagagttccactagct |
9230728 |
T |
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| Q |
101 |
tatctgttttcttgagataaaactaatagaaatagaagaaagtctaacactttatgnnnnnnntgggagaaaccatttctgaagcttcatcctcagcatc |
200 |
Q |
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| T |
9230729 |
tatctgttttcttgagataaaactaatcgaaatagaaaaaagtctaacactttgtgaaaaaaatgggagaaaccatttctgaagcttcatcctcagaatc |
9230828 |
T |
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| Q |
201 |
taaatt----------gaagatagtttctacctttatatacatcctcaa |
239 |
Q |
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| T |
9230829 |
taaattgaagaatcaagaagatagtttctacctttatatacatcctcaa |
9230877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 9169679 - 9169500
Alignment:
| Q |
31 |
tccccattcacatggcttcattaaaatatatatttatggtcaacgattcaaaat-gagagttccactagcttatctgttttcttgagataaaactaatag |
129 |
Q |
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||||| ||||||| ||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
9169679 |
tccccgttcacattgcttcattaaaatat----ttttggtcaacgtttcaaaattgagagttccactagcttatctgttttcttgagataaaacaaatcg |
9169584 |
T |
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| Q |
130 |
aaatagaagaaagtctaacactttatgnnnnnnntgggagaaaccattt---ctgaagcttcatcctcagcatctaaattgaaga |
211 |
Q |
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| T |
9169583 |
aaatagaaaaaagtctaacactttatg-aaaaaatgggagaaaccatttctgctgcagcttcatcctcagcatctaaattgaaga |
9169500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 211
Target Start/End: Original strand, 9255802 - 9255987
Alignment:
| Q |
31 |
tccccattcacatggcttcattaaaatatatatttatggtcaacgattcaaaat-gagagttccacta--gcttatctgttttcttgagataa---aact |
124 |
Q |
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||||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||| ||| |
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| T |
9255802 |
tccccgttcacattgcttcattaaaatat----ttatggtcaacgattcaaaattgagagttccactatagcttatctcttttattgagataataaaaca |
9255897 |
T |
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| Q |
125 |
aatagaaatagaagaaagtctaacactttatgnnnnnnntgggagaaaccattt---ctgaagcttcatcctcagcatctaaattgaaga |
211 |
Q |
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| T |
9255898 |
aatcgaaatagaaaaaagtctaacactttatgaaaaaaatgggagaaaccatttctgctgcagcctcatcctcagcatctaaattgaaga |
9255987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 9172628 - 9172721
Alignment:
| Q |
118 |
taaaactaatagaaatagaagaaagtctaacactttatgnnnnnnntgggagaaaccatttctgaagcttcatcctcagcatctaaattgaaga |
211 |
Q |
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| T |
9172628 |
taaaacaaatcgaaatagaaaaaagtctaacactttatgaaaaaaatgggagaaaccatttctgaagcttcatcctcagcatctaaattgaaga |
9172721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9154916 - 9154981
Alignment:
| Q |
60 |
atatttatggtcaacgattcaaaat-gagagttccacta--gcttatctgttttcttgagataaaa |
122 |
Q |
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| T |
9154916 |
atatttattgtcaacgattcaaaattgagagttccactatagcttatctcttttcttgagataaaa |
9154981 |
T |
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