View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15502_low_8 (Length: 257)

Name: NF15502_low_8
Description: NF15502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15502_low_8
NF15502_low_8
[»] chr5 (11 HSPs)
chr5 (94-251)||(41343630-41343783)
chr5 (1-98)||(41343470-41343567)
chr5 (4-74)||(43129536-43129606)
chr5 (12-76)||(34335337-34335401)
chr5 (4-76)||(37873673-37873745)
chr5 (12-76)||(13166953-13167017)
chr5 (12-76)||(22188698-22188762)
chr5 (4-76)||(25663067-25663139)
chr5 (12-76)||(42921697-42921761)
chr5 (12-71)||(32269840-32269899)
chr5 (18-76)||(23423920-23423978)
[»] scaffold0148 (1 HSPs)
scaffold0148 (4-76)||(33250-33322)
[»] chr7 (18 HSPs)
chr7 (4-76)||(22197986-22198058)
chr7 (4-76)||(22239763-22239835)
chr7 (11-73)||(6635005-6635067)
chr7 (12-76)||(19277293-19277357)
chr7 (13-76)||(43856874-43856937)
chr7 (14-76)||(5972261-5972323)
chr7 (4-98)||(30216093-30216186)
chr7 (12-76)||(982949-983013)
chr7 (12-76)||(21326881-21326945)
chr7 (4-76)||(40726515-40726587)
chr7 (4-76)||(5825273-5825345)
chr7 (4-76)||(28517322-28517394)
chr7 (9-77)||(34772781-34772848)
chr7 (4-76)||(42295219-42295291)
chr7 (12-72)||(47679129-47679189)
chr7 (12-76)||(48539181-48539245)
chr7 (13-76)||(27521471-27521534)
chr7 (12-76)||(4501259-4501322)
[»] chr4 (13 HSPs)
chr4 (12-76)||(50483239-50483303)
chr4 (4-97)||(56462141-56462233)
chr4 (12-76)||(600735-600799)
chr4 (4-76)||(34107731-34107803)
chr4 (3-96)||(46391349-46391440)
chr4 (11-98)||(747811-747897)
chr4 (12-76)||(55933505-55933567)
chr4 (4-76)||(7536606-7536678)
chr4 (11-98)||(712635-712721)
chr4 (12-75)||(11562899-11562962)
chr4 (12-72)||(12918415-12918475)
chr4 (4-76)||(53098421-53098493)
chr4 (12-76)||(53619586-53619650)
[»] chr3 (11 HSPs)
chr3 (9-77)||(54508424-54508492)
chr3 (2-76)||(51234616-51234690)
chr3 (9-98)||(25325008-25325096)
chr3 (12-76)||(53785709-53785773)
chr3 (12-76)||(7900858-7900922)
chr3 (12-76)||(52741555-52741619)
chr3 (11-74)||(7502054-7502117)
chr3 (12-98)||(39583272-39583357)
chr3 (4-76)||(37133034-37133106)
chr3 (12-76)||(44198767-44198831)
chr3 (12-76)||(32546795-32546859)
[»] chr2 (12 HSPs)
chr2 (12-98)||(18744997-18745082)
chr2 (12-76)||(4413109-4413173)
chr2 (12-76)||(28225000-28225064)
chr2 (11-76)||(13147142-13147207)
chr2 (12-76)||(20142768-20142832)
chr2 (12-76)||(34814862-34814925)
chr2 (12-76)||(41867951-41868015)
chr2 (42-95)||(7760918-7760970)
chr2 (12-72)||(9685458-9685518)
chr2 (12-76)||(17344638-17344702)
chr2 (4-76)||(19161818-19161890)
chr2 (12-76)||(29808075-29808139)
[»] chr1 (14 HSPs)
chr1 (10-98)||(2898681-2898768)
chr1 (12-98)||(4862032-4862117)
chr1 (12-76)||(29169836-29169900)
chr1 (12-76)||(34644566-34644630)
chr1 (12-72)||(45659691-45659751)
chr1 (10-76)||(28041168-28041234)
chr1 (11-76)||(24177553-24177618)
chr1 (4-76)||(21473003-21473075)
chr1 (12-76)||(31737366-31737430)
chr1 (12-77)||(2764478-2764543)
chr1 (13-74)||(22346897-22346958)
chr1 (13-77)||(16500033-16500097)
chr1 (4-76)||(20259832-20259904)
chr1 (12-76)||(50314667-50314731)
[»] chr8 (9 HSPs)
chr8 (12-98)||(24125007-24125092)
chr8 (12-97)||(8115792-8115875)
chr8 (9-79)||(8540417-8540487)
chr8 (12-76)||(3187969-3188033)
chr8 (4-76)||(8619814-8619886)
chr8 (12-98)||(38815273-38815358)
chr8 (4-96)||(25021849-25021940)
chr8 (4-76)||(35740021-35740093)
chr8 (4-72)||(36004126-36004194)
[»] chr6 (8 HSPs)
chr6 (4-73)||(959583-959652)
chr6 (12-76)||(33220754-33220818)
chr6 (12-97)||(4165965-4166049)
chr6 (12-76)||(4206639-4206703)
chr6 (11-98)||(28625909-28625995)
chr6 (11-76)||(13398224-13398289)
chr6 (12-76)||(17249348-17249412)
chr6 (12-76)||(34304496-34304560)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-75)||(103107-103170)
[»] scaffold0490 (1 HSPs)
scaffold0490 (15-76)||(6334-6395)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 41343630 - 41343783
Alignment:
Q  94 gcatactatgtacttagaagtgaggaattacgagttacaacccacatctcgacatatcaaatatctatacaannnnnnnactatgtgagctaaatttact 193  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |    ||||||||||||||||    
T  41343630 gcatactatgtacttagaagtgaggaattacgagttacaacccgtgtctcgacatatcaaatatctatacaattttttta----gtgagctaaatttact 41343725  T
Q  194 agactaatcgttctctttctaaatagataaacattaaagaaaacaagatattacctat 251  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41343726 agactaatcattctctttctaaatagataaacattaaaggaaacaagatattacctat 41343783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41343470 - 41343567
Alignment:
Q  1 taccaacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||| |||||||||||||| ||||||||| |||| ||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||    
T  41343470 taccaacgtgcttttataccatttgttttcgacatattcggttttctagcaccagaggttgttggccttctacataatagttcaaaggatcatgcata 41343567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 43129606 - 43129536
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 74  Q
    |||| ||||||| ||||||||||||| |||||||||| ||| |||||| |||| ||| |||||||||||||    
T  43129606 caacatgtttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttctaca 43129536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34335401 - 34335337
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||| ||| |||| |||||| ||||| ||| |||||| |||||||||||||||||    
T  34335401 ttttataccatttgtttttgacactttcgactttctgacaccagaggctgttgaccttctacata 34335337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 37873673 - 37873745
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| |||| ||| |  || ||| || ||||||||||||||||||||||||    
T  37873673 caacatgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttctacata 37873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 13166953 - 13167017
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| |||||  || ||| ||||||||  |||||||||||||||||    
T  13166953 ttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacata 13167017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 22188698 - 22188762
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||| ||||| ||| |||| |||||||||| || || |||||| |||||||||||||||||    
T  22188698 ttttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctacata 22188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 25663067 - 25663139
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| |||| ||||   || ||| ||||||| |||||||| ||||||||||    
T  25663067 caacatgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacata 25663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 42921761 - 42921697
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||  |||| ||||| ||| ||| || |||||||||||| |||||||||||    
T  42921761 ttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacata 42921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 32269840 - 32269899
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttct 71  Q
    |||||||||||||||||| || | ||||||||| ||| ||  ||||||||||||||||||    
T  32269840 ttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttct 32269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 23423920 - 23423978
Alignment:
Q  18 accatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||| |||| |||| | || ||||||||| | |||||||||||||||||||    
T  23423920 accatttgcttttgacactttcaacttcctaacatcaaatgttgttgaccttctacata 23423978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 33322 - 33250
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| |||||||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  33322 caacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacata 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 22198058 - 22197986
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22198058 caacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 22239763 - 22239835
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22239763 caacatgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22239835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 6635005 - 6635067
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 73  Q
    |||||||| |||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  6635005 tttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctac 6635067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 19277357 - 19277293
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  19277357 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 19277293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 43856937 - 43856874
Alignment:
Q  13 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||| ||||||||| |||||||| | ||| |||||| ||||||||||||||||||||||||    
T  43856937 tttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacata 43856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 5972261 - 5972323
Alignment:
Q  14 ttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||| ||| |||||||||  |||||||  ||||||||||||||||||||||||||    
T  5972261 ttataccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttctacata 5972323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 30216093 - 30216186
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||| ||||||||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||| |||| |||||| |||| ||| | |||||||||    
T  30216093 caacatgtttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataa-agttcaaatggtcatgcata 30216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 983013 - 982949
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| || | ||||| ||||||| || |||||||||||| |||||||||||    
T  983013 ttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacata 982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 21326881 - 21326945
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||| ||||||    
T  21326881 ttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgaccttttacata 21326945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 40726515 - 40726587
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||| ||| |||| |||||  ||  || |||||||||||||||||||||||||||    
T  40726515 caacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacata 40726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 5825345 - 5825273
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| |||||||||||||||| |||| |||| |||||   | ||| || ||||||||||||||||||||||||    
T  5825345 caacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacata 5825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 28517322 - 28517394
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| |||| ||| || || ||| ||||||||   ||||||||||||||||    
T  28517322 caacatgtttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttctacata 28517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 34772848 - 34772781
Alignment:
Q  9 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 77  Q
    ||||||||||||||||||||| || | |||| |||| || | || ||||||||||||||||||||||||    
T  34772848 tgtttttataccatttgcttttgaaactttcaattt-cttagattagaggttgttgaccttctacataa 34772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 42295219 - 42295291
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||| |||  | | ||||| ||| |||||| ||| ||||||||||||||||||||    
T  42295219 caacatgtttttataccatttgttttttatactttcggtttcctaacaccaggggttgttgaccttctacata 42295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 47679189 - 47679129
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 72  Q
    |||||||| |||||| || |||||||||| ||| ||| ||||| |||||||||||||||||    
T  47679189 ttttatactatttgcgtttgacattttcggtttcctagcatcacaggttgttgaccttcta 47679129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 48539245 - 48539181
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| ||||||| || |||||| |||||| | ||||||||    
T  48539245 ttttataccatttgcttttgacactttcggttttctagcaccagaggctgttgatcgtctacata 48539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 27521534 - 27521471
Alignment:
Q  13 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||| |||| |||| |||| ||| | ||| ||| |||||||||||||||||||||||||||    
T  27521534 tttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacata 27521471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4501322 - 4501259
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||  ||||||||| |||| ||| | ||||||| || ||||||||||||||||||||||||    
T  4501322 ttttatataatttgcttttgacactttgg-ttttctagcaccagaggttgttgaccttctacata 4501259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 50483239 - 50483303
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||||||||||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  50483239 ttttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacata 50483303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 56462141 - 56462233
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 97  Q
    |||| ||||||||||||||||| ||| |||| ||| | ||| ||| || ||||||||||||||||||||||| | |||| ||||||||||||||    
T  56462141 caacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaggatcatgcat 56462233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 600735 - 600799
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| | || ||||| ||| |||||| ||||||||||||||||||||||||    
T  600735 ttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgttgaccttctacata 600799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 34107731 - 34107803
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||| ||| |||| ||||||||| ||| || |||||| |||||||||||||||||    
T  34107731 caacatgtttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctacata 34107803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 46391349 - 46391440
Alignment:
Q  3 ccaacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgca 96  Q
    ||||| ||||||||||||||| ||||   ||||||||||||| ||| ||  |||||||||||||||||||||||| |||| ||| |||||||||    
T  46391349 ccaacatgtttttataccatt-gcttgtaacattttcgatttcctatcagtagaggttgttgaccttctacataa-agttcaaaagatcatgca 46391440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 747811 - 747897
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    ||||||||||||||||||| || ||||  | |||  ||| ||||||||||||||||||||||||| | |||||||| | |||||||||    
T  747811 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgaccttctacat-agagtttaaaaggtcatgcata 747897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 55933505 - 55933567
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| |||||| || ||| ||||  |||||||||||||||||||||    
T  55933505 ttttataccatttgcttttgacactttcgacttcctagcatc--aggttgttgaccttctacata 55933567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 7536606 - 7536678
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||| ||||| ||| |||| ||||  ||| ||| || ||||||||||||||||||||||||    
T  7536606 caacatgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctacata 7536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 712635 - 712721
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    ||||||||||||||||||| || ||||  | |||  ||| |||||||||||||| |||||||||| | |||||||| | |||||||||    
T  712635 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgtccttctacat-agagtttaaaaggtcatgcata 712721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 11562962 - 11562899
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 75  Q
    ||||||| ||||| |||| |||||||||| ||||||||||   ||||||||||| |||||||||    
T  11562962 ttttatatcatttactttagacattttcggttttctaacactcgaggttgttgatcttctacat 11562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 12918415 - 12918475
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 72  Q
    |||||||| |||| |||| |||| |||||| || ||| |||||||| ||||||||||||||    
T  12918415 ttttatactatttacttttgacactttcgacttcctagcatcagagattgttgaccttcta 12918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 53098493 - 53098421
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| |||||||  ||| ||| |||| |||||||| | ||| ||| |||||||||||||| ||||||||||||    
T  53098493 caacatgtttttgaaccgtttccttttgacatttttggtttcctagcatcagaggttgttaaccttctacata 53098421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 53619650 - 53619586
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||| ||| |||| ||| || || ||| |||||||||  ||||||||||||||||    
T  53619650 ttttataccatttgtttttgacacttttgacttcctagcatcagaggcagttgaccttctacata 53619586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 54508424 - 54508492
Alignment:
Q  9 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 77  Q
    |||||||||| |||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||||    
T  54508424 tgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctgcataa 54508492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 51234690 - 51234616
Alignment:
Q  2 accaacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||| || |||||||||||||  ||| |||| |||||| |||||| |||||||||||||||||||||||||||    
T  51234690 accaacatgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacata 51234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 25325096 - 25325008
Alignment:
Q  9 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||||||||||||||| ||| ||||||||| ||| || || || ||||||||||||||||| | |||| ||| |||||||||||    
T  25325096 tgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctacat-agagttcaaatgatcatgcata 25325008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 53785773 - 53785709
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  53785773 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 53785709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7900922 - 7900858
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  7900922 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 7900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 52741555 - 52741619
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||| | ||| ||| || ||||||||||||||||||||||||    
T  52741555 ttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacata 52741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 7502054 - 7502117
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 74  Q
    |||||||||||||| |||| |||||||| | ||| ||| || ||||||||||||||||||||||    
T  7502054 tttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 39583272 - 39583357
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    ||||||| |||||| |||||||| ||||| ||| ||| ||||| |||||||||||||||| ||| | |||| ||||| |||||||||    
T  39583272 ttttatatcatttgttttcgacactttcggtttcctagcatcataggttgttgaccttctgcat-agagttcaaagggtcatgcata 39583357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 37133034 - 37133106
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||| |||  ||| ||||| |||  || || ||||||||||||||||||||||||    
T  37133034 caacatgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgaccttctacata 37133106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 44198831 - 44198767
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| |||  ||||| | |||| |||||||||||||||||    
T  44198831 ttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttctacata 44198767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 32546859 - 32546795
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||  ||| ||| || || ||| |||||||||||||||||    
T  32546859 ttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgaccttctacata 32546795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 18744997 - 18745082
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||||||||||| |||||||||||||||||| || || ||| ||||| |||||||||| | |||| ||| |||||||||||    
T  18744997 ttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttctacat-agagttcaaaagatcatgcata 18745082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 4413109 - 4413173
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||| ||||||||||||||||||    
T  4413109 ttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacata 4413173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 28225064 - 28225000
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| |||||  || ||| | |||||||||||||||||||||||||    
T  28225064 ttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacata 28225000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13147142 - 13147207
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||| ||| |||| ||| | |||||||||| ||||| ||||||||||||| ||||    
T  13147142 tttttataccatttgattttgacacttttggttttctaacaccagagattgttgaccttcttcata 13147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 20142768 - 20142832
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||| |||| |||| ||| | ||||||| ||||| |||||||||||||| ||||||    
T  20142768 ttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacata 20142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 34814862 - 34814925
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||||||||||| |||||  || |||||| |||||  |||||||||||||||||    
T  34814862 ttttataccatttgctttcgacactttcg-gttcctaacaccagagactgttgaccttctacata 34814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 41867951 - 41868015
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| |||||  || ||| || |||||| |||||||||||||||||    
T  41867951 ttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacata 41868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 7760918 - 7760970
Alignment:
Q  42 ttttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgc 95  Q
    ||||||| || ||||||||||||||||||||||| | |||| ||||||||||||    
T  7760918 ttttctatcaccagaggttgttgaccttctacat-agagttcaaaggatcatgc 7760970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 9685458 - 9685518
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 72  Q
    |||||||||||||||||| |||| ||| ||||||||| ||  ||||| ||| |||||||||    
T  9685458 ttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttcta 9685518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17344702 - 17344638
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||  ||| ||| || || ||| |||||||||||||||||    
T  17344702 ttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttctacata 17344638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 19161818 - 19161890
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| |||| ||||| |||| |||||  ||||| || | ||||| ||||||    
T  19161818 caacatgtttttataccatttgcttttgacactttcggttttgtaacactagaggctgcttaccttttacata 19161890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 29808139 - 29808075
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||||||  ||||| |  |||| ||| |||| ||||||||||||||| ||||||    
T  29808139 ttttataccatttgcttttcacattatttatttcctagcatcggaggttgttgaccttttacata 29808075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 2898768 - 2898681
Alignment:
Q  10 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||||||||||||| || | ||||| ||| ||| || ||||||||||||||||||||||| | |||| ||| |||||||||||    
T  2898768 gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaagatcatgcata 2898681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 4862032 - 4862117
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||| ||||||||| |||| ||||||||| |||||| || | |||||||||||||||||| | |||| ||||| |||||||||    
T  4862032 ttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttctacat-agagttcaaagggtcatgcata 4862117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 29169836 - 29169900
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  29169836 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctacata 29169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34644630 - 34644566
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  34644630 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 34644566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 45659691 - 45659751
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 72  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||||||    
T  45659691 ttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttcta 45659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 28041168 - 28041234
Alignment:
Q  10 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||||| |||| ||||| ||| ||| || ||||||  ||||||||||||||||    
T  28041168 gtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacata 28041234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 24177553 - 24177618
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||| ||| |||| ||||| ||| ||| ||||||||| |||| ||||||||||||    
T  24177553 tttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacata 24177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 21473075 - 21473003
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||||||| |||| || |  ||| ||| || |||||| |||||||||||||||||    
T  21473075 caacatgtttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttctacata 21473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 31737366 - 31737430
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||| ||| |||| ||||||||||||| ||| ||||| | ||||| |||||||||    
T  31737366 ttttataccatttgtttttgacactttcgattttctagcattagaggctattgacattctacata 31737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 2764543 - 2764478
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 77  Q
    |||||| |||||| |||| |||| ||||   || ||| ||||||||||||||||||||||||||||    
T  2764543 ttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttctacataa 2764478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 22346958 - 22346897
Alignment:
Q  13 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 74  Q
    |||||||| |||||||| |||| ||||| ||| |||  | ||||||||||||||||||||||    
T  22346958 tttataccttttgcttttgacactttcggtttcctagtagcagaggttgttgaccttctaca 22346897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 16500097 - 16500033
Alignment:
Q  13 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 77  Q
    ||||||| ||||||||| |||| ||| || || ||| ||| ||||| ||||||||||||||||||    
T  16500097 tttatactatttgcttttgacacttttgacttcctagcattagaggctgttgaccttctacataa 16500033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 20259832 - 20259904
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||||||||  | | |||| ||||| |||  || || ||||||||||||||||||||||||    
T  20259832 caacatgtttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttctacata 20259904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 50314667 - 50314731
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||| |||| ||||||||  |||| ||||||  ||| ||||||||| |||||||||    
T  50314667 ttttataccatttacttttgacattttttatttcctaacacaagatgttgttgactttctacata 50314731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 24125092 - 24125007
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||||||||||| |||| ||| ||||| ||| || |||||||||||| |||||||||||| |||| ||| | |||||||||    
T  24125092 ttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataa-agttcaaaaggtcatgcata 24125007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 8115875 - 8115792
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 97  Q
    ||||||||||||||| || |||| ||| | |||| ||| || |||||||||||||||||||||||| |||| ||||||||||||||    
T  8115875 ttttataccatttgcatttgacacttttggttttttaa-atgagaggttgttgaccttctacataa-agttcaaaggatcatgcat 8115792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 8540417 - 8540487
Alignment:
Q  9 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataata 79  Q
    |||||||||  ||| ||| || |||| |||| | |||||||||||||||||||||||| ||||||||||||    
T  8540417 tgtttttatgtcatctgcatttgacactttcaactttctaacatcagaggttgttgactttctacataata 8540487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 3188033 - 3187969
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| || | |||||  || ||| |||||||||||||| ||||||||||||    
T  3188033 ttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacata 3187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 8619886 - 8619814
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||| |||||||||||||| |||  ||||||| |  ||||||||| |||||||||||||| ||| |||||    
T  8619886 caacgtgcttttataccatttgtttttaacatttttggctttctaacaccagaggttgttgactttcgacata 8619814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 38815358 - 38815273
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    |||||||||||||||||| |||| ||||   || ||| || |||||| |||||||||||||||| | |||| ||||| |||||||||    
T  38815358 ttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacat-agagttcaaagggtcatgcata 38815273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 25021849 - 25021940
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgca 96  Q
    |||| |||||||||||||||| |||| |||||||| |  || ||| || ||||||||||||||| || ||| || |||| ||||| |||||||    
T  25021849 caacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgaccatccacacaa-agttcaaagggtcatgca 25021940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 35740021 - 35740093
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||| ||||||||||| ||| ||||| |||| ||||  ||| ||| || ||||| ||||||||||||||||||    
T  35740021 caacatgtttttatacaattagcttttgacactttcagtttcctagcaccagagattgttgaccttctacata 35740093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 36004194 - 36004126
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 72  Q
    |||| |||||||||||||||| | || |||||||| || || ||| || ||||||||||||||| ||||    
T  36004194 caacatgtttttataccatttacatttgacatttttgacttcctatcaccagaggttgttgaccatcta 36004126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 959652 - 959583
Alignment:
Q  4 caacgtgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 73  Q
    |||| ||| ||||||||||||| ||| |||||||||| ||| ||| || |||||||||||||||||||||    
T  959652 caacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttctac 959583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 33220754 - 33220818
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| |||||  || ||| |||| ||||||||||||||||||||||    
T  33220754 ttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttctacata 33220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 4165965 - 4166049
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 97  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||| | |||||||| | ||||||||    
T  4165965 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacat-agagtttaaaaggtcatgcat 4166049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 4206639 - 4206703
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||||    
T  4206639 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacata 4206703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 28625995 - 28625909
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 98  Q
    ||||||||||||||| |||  ||| |||| |||| ||| || ||||||||||||| ||||||||||| |||| ||| | |||||||||    
T  28625995 tttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttctacataa-agttcaaaaggtcatgcata 28625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13398224 - 13398289
Alignment:
Q  11 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||| |||| |||| || ||||| || || ||||||||||| ||||||||| |||||||||    
T  13398224 tttttatactatttacttttgatatttttgacttcctaacatcagaagttgttgacattctacata 13398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 17249348 - 17249412
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||| |  || ||| |||||||||  ||||||||||||||||    
T  17249348 ttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacata 17249412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34304560 - 34304496
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    |||||||||||||||||| |||| ||| |  || ||| ||||||| | |||||||||||||||||    
T  34304560 ttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttctacata 34304496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 103170 - 103107
Alignment:
Q  12 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 75  Q
    |||||||||||||||||| |||| ||||| ||| ||| || |||||| ||||||||||||||||    
T  103170 ttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacat 103107  T

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Target: scaffold0490 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 6395 - 6334
Alignment:
Q  15 tataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 76  Q
    ||||||||||||||| |||| ||||  ||| ||| || |||||| |||||||||||||||||    
T  6395 tataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacata 6334  T

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