View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15503_high_12 (Length: 337)

Name: NF15503_high_12
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15503_high_12
NF15503_high_12
[»] chr4 (1 HSPs)
chr4 (19-311)||(49246551-49246842)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 49246842 - 49246551
Alignment:
Q  19 ggggaagggaatatatgaatggaagaagggtggttttgttgttatggttttagctgtagggttgtggcctgcaactgcacaattctatagaaaggaaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49246842 ggggaagggaatatatgaatggaagaagggtggttttgttgttatggttttagctgtagggttgtggcctgcaactgcacaattctatagaaaggaaaac 49246743  T
Q  119 aaagagtgcgtcttttccgctgtcacgcgcatcgttgtgataatcgaaaggatgnnnnnnntggacaaattgcgcttgtttgtttattcgttaacctttt 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  49246742 aaacagtgcgtcttttccgctgtcacgcgcatcgttgtgataatcgaaaggatgaaaaaaatggacaaattgcgcttgtttgtttattcgttaacctttt 49246643  T
Q  219 ctgttttcgctgtcttacggttcgactattgtcgttacgaataaagtggaggagattgcacaattaataaataaataaaatatttaaatatat 311  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49246642 ctgttttcgctgtc-gacggttcgactattgtcgttacgaataaagtggaggagattgcacaattaataaataaataaaatatttaaatatat 49246551  T

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