View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_high_13 (Length: 317)
Name: NF15503_high_13
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 121 - 295
Target Start/End: Complemental strand, 20658496 - 20658318
Alignment:
| Q |
121 |
ggacacgccttcaatcagaagtttcggtgcaacatagacagctatgctcacataatttgacttagcaactaaattagttgagcatttattctcagctatt |
220 |
Q |
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| T |
20658496 |
ggacacgccttcaatcagaagtttcggtgcaacatagacagctatgttcacataatttgacttagcaactaaattagttgagcatttattctcagctatt |
20658397 |
T |
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| Q |
221 |
agaataagtcttcactaaacaatatatataataaa----acataaaaacctaattataaagttaagatagagagacctg |
295 |
Q |
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| T |
20658396 |
agaataagtcttcactaaacaatatatataataaaaaataaataaaaacctaattataaagttaagatagagagacctg |
20658318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 20658678 - 20658596
Alignment:
| Q |
1 |
atagctatattcaatattttctatcttaacttattaccgctatatatatgaagcacatatacagatacggacaccggacacagac |
85 |
Q |
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| T |
20658678 |
atagctatattcaatattttctatcttaacttattaccgc--tatctatgaagcacagacacggacacggacaccagacacagac |
20658596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 20658574 - 20658540
Alignment:
| Q |
77 |
gacacagacaagttttgagaaaatgacatgattcg |
111 |
Q |
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| T |
20658574 |
gacacagacaagttttgagaaaatgacatgattcg |
20658540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 10702488 - 10702452
Alignment:
| Q |
122 |
gacacgccttcaatcagaagtttcggtgcaacataga |
158 |
Q |
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| T |
10702488 |
gacacaccttcaatcagaagtgtcggtgcaacataga |
10702452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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