View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15503_high_2 (Length: 613)

Name: NF15503_high_2
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15503_high_2
NF15503_high_2
[»] chr3 (6 HSPs)
chr3 (1-541)||(49302767-49303314)
chr3 (437-532)||(49501522-49501619)
chr3 (440-532)||(41649949-41650043)
chr3 (437-529)||(49742092-49742186)
chr3 (471-532)||(2447630-2447691)
chr3 (437-532)||(23029647-23029744)
[»] chr4 (14 HSPs)
chr4 (437-541)||(42118974-42119080)
chr4 (443-533)||(45042998-45043090)
chr4 (441-541)||(37694493-37694595)
chr4 (437-532)||(43502275-43502372)
chr4 (437-532)||(52789395-52789492)
chr4 (453-533)||(52032691-52032771)
chr4 (437-540)||(33985431-33985536)
chr4 (437-525)||(47020065-47020155)
chr4 (440-532)||(54808994-54809088)
chr4 (451-532)||(51242826-51242907)
chr4 (457-541)||(779437-779521)
chr4 (456-539)||(34939342-34939425)
chr4 (437-532)||(54703637-54703734)
chr4 (437-522)||(9242920-9243006)
[»] chr2 (12 HSPs)
chr2 (437-541)||(4616619-4616725)
chr2 (440-532)||(41192373-41192467)
chr2 (437-532)||(32737862-32737959)
chr2 (457-532)||(5814525-5814600)
chr2 (437-541)||(5290682-5290787)
chr2 (453-532)||(6728636-6728715)
chr2 (437-532)||(21083768-21083864)
chr2 (437-526)||(26257771-26257863)
chr2 (437-532)||(34619891-34619988)
chr2 (453-541)||(2195149-2195236)
chr2 (437-532)||(1887918-1888015)
chr2 (437-541)||(37057199-37057305)
[»] chr7 (7 HSPs)
chr7 (437-541)||(39283989-39284095)
chr7 (439-540)||(14678306-14678409)
chr7 (437-524)||(4035150-4035239)
chr7 (437-532)||(37450002-37450099)
chr7 (440-532)||(3742360-3742450)
chr7 (437-522)||(8260879-8260966)
chr7 (438-521)||(40144784-40144869)
[»] chr8 (10 HSPs)
chr8 (437-532)||(5913106-5913203)
chr8 (437-541)||(4759190-4759295)
chr8 (440-541)||(1217794-1217897)
chr8 (437-524)||(9039665-9039754)
chr8 (439-541)||(42182662-42182766)
chr8 (474-532)||(15739697-15739755)
chr8 (435-541)||(2766844-2766952)
chr8 (453-524)||(4322714-4322785)
chr8 (453-524)||(35161624-35161694)
chr8 (472-539)||(23810840-23810906)
[»] chr6 (3 HSPs)
chr6 (437-539)||(3515201-3515305)
chr6 (439-533)||(30634104-30634200)
chr6 (437-532)||(11599019-11599116)
[»] chr1 (11 HSPs)
chr1 (437-532)||(33686534-33686631)
chr1 (439-532)||(7014764-7014859)
chr1 (439-533)||(22605440-22605536)
chr1 (453-533)||(49150562-49150642)
chr1 (453-532)||(43138639-43138718)
chr1 (440-522)||(30858499-30858583)
chr1 (437-529)||(12926827-12926921)
chr1 (442-541)||(1671308-1671408)
chr1 (437-541)||(15399069-15399175)
chr1 (472-524)||(10308509-10308561)
chr1 (471-533)||(41871767-41871829)
[»] chr5 (8 HSPs)
chr5 (437-507)||(43147441-43147513)
chr5 (437-532)||(1081878-1081975)
chr5 (437-532)||(12144046-12144143)
chr5 (437-532)||(18172125-18172222)
chr5 (437-541)||(40033982-40034089)
chr5 (437-517)||(2786732-2786814)
chr5 (436-532)||(34954047-34954145)
chr5 (437-524)||(7662202-7662291)
[»] scaffold0051 (1 HSPs)
scaffold0051 (437-532)||(20093-20190)
[»] scaffold0753 (1 HSPs)
scaffold0753 (437-522)||(3998-4085)
[»] scaffold0217 (1 HSPs)
scaffold0217 (436-522)||(25597-25685)


Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 49302767 - 49303314
Alignment:
Q  1 aggcattattctccctttttcatccagattaacatgtcattgggaaatctttttctttttgttggtacaatttcataggaagttagtctcactgaatatt 100  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49302767 aggcattattcacccttgttcatccagagtaacatgtcattgggaaaactttttctttttgttggtacaatttcataggaagttagtctcactgaatatt 49302866  T
Q  101 atgcaatagacannnnnnnnnn---ctgttaaaaagacggcaaaattgcaccaag-acttgtatcttgattttcatgttcatgcagtcatttatctctgt 196  Q
    ||||||||||||             |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  49302867 atgcaatagacatttttttttttttctgttaaaaagaaggcaaaattgcaccaaggacttgtatcttgattttcatgttcatgcagtcacttatctctgt 49302966  T
Q  197 ctcaggttagtgttggtacatttcaaaatgtttaccccgtttgacctgccttcattctctgtcaacttattttacggatttgcatatatgaaaatcaaaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49302967 ctcaggttagtgttggtacatttcaaaatgtttaccccgtttgacctgccttcattctctgtcaacttattttacggatttgcatatatgaaaatcaaaa 49303066  T
Q  297 gatatattacaaagaaatgaaaaatatcgtcacattaccccgttgagaaatcttaaataatcatgttttttaatgataaatgttaatatgcctattgtta 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49303067 gatatattacaaagaaatgaaaaatatcgtcacattaccccgttgagaaatcttaaataatcatgttttttaatgataaatgttaatatgcctattgtta 49303166  T
Q  397 ttttagtattttcacccagcacattttg-ttgtgcccggcatgcgtgacttaagt--cacaccactgagcctctacacgagttaactcgcgtaagttggc 493  Q
    |||||||||||||||||| ||||||||| | | || | |||||||||||||||||  ||||||||||||||||| | |||||||||||||| ||||||||    
T  49303167 ttttagtattttcacccaccacattttgctcgcgctctgcatgcgtgacttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggc 49303266  T
Q  494 cggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaatgc 541  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  49303267 cggtggtaaaaactgaagcacaaacgtttctaggacggtaatcaatgc 49303314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 49501619 - 49501522
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||| | | |  ||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| |||||||    
T  49501619 tgcgtgacttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggt 49501522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 532
Target Start/End: Original strand, 41649949 - 41650043
Alignment:
Q  440 gtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||  || ||||||||| | | |||||||| | ||| |||||||||||||||||||||| ||||||||| |||||| |||||||    
T  41649949 gtgacttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggt 41650043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 437 - 529
Target Start/End: Complemental strand, 49742186 - 49742092
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggac 529  Q
    |||||||||||||||||  ||||||||| || | | |||||||||| ||| |||||| ||||||||| ||||| |||||||||||||||| ||||    
T  49742186 tgcgtgacttaagtcacgcaccactgagtctatgcgcgagttaacttgcgcaagttgcccggtggtagaaactgaagcacaaacgtttcttggac 49742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 2447630 - 2447691
Alignment:
Q  471 cgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||||||||||||| |||||||    
T  2447630 cgagttaactggcgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggt 2447691  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 23029647 - 23029744
Alignment:
Q  437 tgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||||  ||||||||||||| | |  ||||||||| ||   ||||||||||||||| ||||| || || |||||||||| |||||||    
T  23029647 tgcgtgacttaagtcatgcaccactgagcctatgcgggagttaacttgccctagttggccggtggtagaaactgaaacagaaacgtttcttggacggt 23029744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 437 - 541
Target Start/End: Original strand, 42118974 - 42119080
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    |||||||||||||||||  |||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||     
T  42118974 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 42119073  T
Q  535 tcaatgc 541  Q
    |||||||    
T  42119074 tcaatgc 42119080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 533
Target Start/End: Complemental strand, 45043090 - 45042998
Alignment:
Q  443 acttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    |||||||||||  |||||||||||||||   ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  45043090 acttaagtcacgcaccactgagcctctatgtgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtg 45042998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 441 - 541
Target Start/End: Complemental strand, 37694595 - 37694493
Alignment:
Q  441 tgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaa 538  Q
    |||||||||||||  |||||||||||||||| |||||||||  ||| |||||||||||||||||||||| ||||||| |||||| ||||||| || ||||    
T  37694595 tgacttaagtcacgcaccactgagcctctacgcgagttaacctgcgcaagttggccggtggtaaaaactgaagcacagacgtttttgggacgatggtcaa 37694496  T
Q  539 tgc 541  Q
    |||    
T  37694495 tgc 37694493  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 43502372 - 43502275
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||| |  |||||||||||| | | |||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  43502372 tgcgtgacttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 43502275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 52789395 - 52789492
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||| | | |||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| |||||||    
T  52789395 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggt 52789492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 52032771 - 52032691
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    ||||||||||||| | | |||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||    
T  52032771 caccactgagcctatgcgcgagttaacttgcgcaaattggccggtggtaaaaactaaagcacaaacgtttttgggacggtg 52032691  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 540
Target Start/End: Complemental strand, 33985536 - 33985431
Alignment:
Q  437 tgcgtgacttaagtcacac--cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    ||||||||||||||||| |  |||  ||||||| | |||||||||| ||| |||||||||||| ||||||||| |||||||||||||||| ||||||||     
T  33985536 tgcgtgacttaagtcacgcaacacaaagcctctgcgcgagttaacttgcgcaagttggccggtagtaaaaactgaagcacaaacgtttcttggacggtgg 33985437  T
Q  535 tcaatg 540  Q
    ||||||    
T  33985436 tcaatg 33985431  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 47020065 - 47020155
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctg 525  Q
    ||||||| |||||||||  |||||||||||||| | |||||||||| ||| ||||||| |||||||||||||| ||||| |||||||||||    
T  47020065 tgcgtgagttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcaaaaacgtttctg 47020155  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 532
Target Start/End: Complemental strand, 54809088 - 54808994
Alignment:
Q  440 gtgacttaagtc--acaccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||  |||||||||||||| | | |||||||||| ||| |||||||||||||||||||||| || ||||||| ||||| |||||||    
T  54809088 gtgacttaagtcgcacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaaccacaaacatttcttggacggt 54808994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 532
Target Start/End: Original strand, 51242826 - 51242907
Alignment:
Q  451 cacaccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||| | | |||||||||| ||| ||||||||||||||| |||||| ||||| |||||||| | |||||||    
T  51242826 cacaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttggacggt 51242907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 457 - 541
Target Start/End: Complemental strand, 779521 - 779437
Alignment:
Q  457 actgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaatgc 541  Q
    ||||||||||| | | |||||||| ||| |||||||||||||||||||| | |||||  ||||||| |||||||||| |||||||    
T  779521 actgagcctcttcgcaagttaacttgcgcaagttggccggtggtaaaaattgaagcattaacgtttttgggacggtggtcaatgc 779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 539
Target Start/End: Complemental strand, 34939425 - 34939342
Alignment:
Q  456 cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaat 539  Q
    |||||||||| | | ||||||||||  || ||||||||||||||||||||||  ||||||||||||||| | |||||| |||||    
T  34939425 cactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaaactgcagcacaaacgtttcttgaacggtggtcaat 34939342  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 54703637 - 54703734
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||| |  ||||||| |||| |   |||||||||| ||| ||||||| |||||||||||||| ||| |||||||||||| |||||||    
T  54703637 tgcgtgacttaagtcgcgcaccactgggcctatgtgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagaacaaacgtttcttggacggt 54703734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 437 - 522
Target Start/End: Complemental strand, 9243006 - 9242920
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgttt 522  Q
    |||||||||||||||||  |||||||||||| | | ||||||||||| || |||||||||||| || | |||| ||| ||||||||||    
T  9243006 tgcgtgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaacgttt 9242920  T

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Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 437 - 541
Target Start/End: Complemental strand, 4616725 - 4616619
Alignment:
Q  437 tgcgtgacttaagtcacacc--actgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    ||||||||||||||||| ||  ||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||     
T  4616725 tgcgtgacttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtgg 4616626  T
Q  535 tcaatgc 541  Q
    |||||||    
T  4616625 tcaatgc 4616619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 440 - 532
Target Start/End: Complemental strand, 41192467 - 41192373
Alignment:
Q  440 gtgacttaagtcacac--cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||||  |||||||||| |   |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41192467 gtgacttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaaactaaagcacaaacgtttcttggacggt 41192373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 32737959 - 32737862
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||||| |  ||||||||| ||| |||||||||| ||||||||||| |||||||||||||||| |||||||    
T  32737959 tgcgtgacttaagtcacgcaccactgagcctctgcgtgagttaacttgcgcaagttggccgatggtaaaaactgaagcacaaacgtttcttggacggt 32737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 457 - 532
Target Start/End: Complemental strand, 5814600 - 5814525
Alignment:
Q  457 actgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||| ||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  5814600 actgagcctatacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 5814525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 541
Target Start/End: Complemental strand, 5290787 - 5290682
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    |||||||||||||||||  |||||||||||| | |  ||||||||||||| ||||||| |||||||||||||| || |||| |||||||| ||||||||     
T  5290787 tgcgtgacttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagttggacggtggtaaaaactgaaacacagacgtttct-ggacggtgg 5290689  T
Q  535 tcaatgc 541  Q
    |||||||    
T  5290688 tcaatgc 5290682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 453 - 532
Target Start/End: Original strand, 6728636 - 6728715
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||| | | |||||||||| ||| |||||||||||||||||||||| ||||||| |||||||| |||||||    
T  6728636 caccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacagacgtttcttggacggt 6728715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 21083768 - 21083864
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  || ||||||||||| | | |||||||| ||| ||||||||||||||| |||||| |||||||||||||||| |||||||    
T  21083768 tgcgtgacttaagtcacttacaactgagcctctgcgcaagttaacttgcgcaagttggccggtggt-aaaactgaagcacaaacgtttcttggacggt 21083864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 526
Target Start/End: Complemental strand, 26257863 - 26257771
Alignment:
Q  437 tgcgtgacttaagtcacac---cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgg 526  Q
    |||||||||||||||||||   |||||||||||| | | |||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||    
T  26257863 tgcgtgacttaagtcacacatccactgagcctctgcgcaagttaacttgcgcaagttagacggtggtaaaaactgaagcacaaacgtttctgg 26257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 34619988 - 34619891
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  || ||||||||| | | |||||||||| ||  ||||||||||||| |||||||| |||||||||||||||| |||||||    
T  34619988 tgcgtgacttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttggacggt 34619891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 541
Target Start/End: Complemental strand, 2195236 - 2195149
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaatgc 541  Q
    ||||||||| | ||||| |||||||||||||| ||||| |||| ||||||||||||||| |||||||||| | |||||||| |||||||    
T  2195236 caccactgatcatctacccgagttaactcgcgcaagttagccgatggtaaaaactaaagaacaaacgttt-ttggacggtggtcaatgc 2195149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 1887918 - 1888015
Alignment:
Q  437 tgcgtgacttaagtcacacc--actgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||||| ||  ||||| | | | | |||||||||| ||| |||||| ||||||||||||||| |||||||||||||||| |||||||    
T  1887918 tgcgtgacttaagtcacgcccaactgatcatatgcgcgagttaacttgcgcaagttgcccggtggtaaaaactgaagcacaaacgtttcttggacggt 1888015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 541
Target Start/End: Original strand, 37057199 - 37057305
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    |||||||||||||||||  |||||| || || ||| ||||||||||   | ||||| |  ||||||||||||| |||||||||||||| ||||||||||     
T  37057199 tgcgtgacttaagtcacgcaccactaagtctttacgcgagttaacttatgcaagttagttggtggtaaaaactgaagcacaaacgtttttgggacggtgg 37057298  T
Q  535 tcaatgc 541  Q
    |||||||    
T  37057299 tcaatgc 37057305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 437 - 541
Target Start/End: Original strand, 39283989 - 39284095
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    |||||||||||||||||  |||||||||||||||| |||||||| | ||| ||||||| |||||||||||||| |||||||||||||| ||||||||||     
T  39283989 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaatttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttttgggacggtgg 39284088  T
Q  535 tcaatgc 541  Q
    |||||||    
T  39284089 tcaatgc 39284095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 540
Target Start/End: Original strand, 14678306 - 14678409
Alignment:
Q  439 cgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatc 536  Q
    |||||||||||||||  ||||||||||||||    ||||||||| ||| ||||||||||||||||||||||  ||||||||||||||| |||||||| ||    
T  14678306 cgtgacttaagtcacgcaccactgagcctctgtgtgagttaacttgcgcaagttggccggtggtaaaaactgcagcacaaacgtttcttggacggtggtc 14678405  T
Q  537 aatg 540  Q
    ||||    
T  14678406 aatg 14678409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 4035239 - 4035150
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    |||||||||||||||||  |||||||||||| | | |||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||    
T  4035239 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttct 4035150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 37450002 - 37450099
Alignment:
Q  437 tgcgtgacttaagtcacac--cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||| | |  |||||||||| | |||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||| |||||||    
T  37450002 tgcgtgacttaagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggt 37450099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 440 - 532
Target Start/End: Complemental strand, 3742450 - 3742360
Alignment:
Q  440 gtgacttaagtcacaccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||  |||||||||| | |  ||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  3742450 gtgacttaagtcac--cactgagcctatgcgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 3742360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 8260879 - 8260966
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgttt 522  Q
    |||||||||||||||||  |||||||||||| | | ||||||||||| || ||||||||||||||| | |||| | | ||||||||||    
T  8260879 tgcgtgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaacgttt 8260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 521
Target Start/End: Complemental strand, 40144869 - 40144784
Alignment:
Q  438 gcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtt 521  Q
    ||||||||||||||||  ||||||||| || |   ||| |||||  ||| |||||||||||||||||||||| |||||||||||||    
T  40144869 gcgtgacttaagtcacgcaccactgagtctatgtgcgacttaacctgcgcaagttggccggtggtaaaaactgaagcacaaacgtt 40144784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 5913203 - 5913106
Alignment:
Q  437 tgcgtgacttaagtcacac--cactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||||  || |||||||||   |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  5913203 tgcgtgacttaagtcacacaccattgagcctctgtgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctgggacggt 5913106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 437 - 541
Target Start/End: Complemental strand, 4759295 - 4759190
Alignment:
Q  437 tgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    ||||||||||||||||  ||||||||||||||| | |||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| ||||||||     
T  4759295 tgcgtgacttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcacaaacgtttct-ggacggtgt 4759197  T
Q  535 tcaatgc 541  Q
    |||||||    
T  4759196 tcaatgc 4759190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 440 - 541
Target Start/End: Original strand, 1217794 - 1217897
Alignment:
Q  440 gtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatca 537  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||| ||| |||||||||||||||||||||| || |||||||||||||||||||||| |||    
T  1217794 gtgacttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaaactgaaacacaaacgtttctgggacggtggtca 1217893  T
Q  538 atgc 541  Q
    ||||    
T  1217894 atgc 1217897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 524
Target Start/End: Original strand, 9039665 - 9039754
Alignment:
Q  437 tgcgtgacttaagtcaca--ccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    ||||||||||||||||||  ||||||| ||||| | |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  9039665 tgcgtgacttaagtcacacaccactgaacctctgcgcgagttaacttgcgcaagttggccggtggtaaaaactacagcacaaacgtttct 9039754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 439 - 541
Target Start/End: Original strand, 42182662 - 42182766
Alignment:
Q  439 cgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatc 536  Q
    |||||| ||||||||  ||||||||| |||||| |||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||  ||| ||    
T  42182662 cgtgacctaagtcacgcaccactgagtctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggatagtggtc 42182761  T
Q  537 aatgc 541  Q
    |||||    
T  42182762 aatgc 42182766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 532
Target Start/End: Complemental strand, 15739755 - 15739697
Alignment:
Q  474 gttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  15739755 gttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 15739697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 435 - 541
Target Start/End: Complemental strand, 2766952 - 2766844
Alignment:
Q  435 catgcgtgacttaagtcaca--ccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||| || |||||||  ||||||| ||||| ||||||||||| | || ||||||||| ||||| |||||| ||| |||||||||| | |||||||    
T  2766952 catgcgtgagtttagtcacaaaccactgaacctctgcacgagttaacgcacgcaagttggccagtggtcaaaactgaagaacaaacgttttttggacggt 2766853  T
Q  533 gatcaatgc 541  Q
    | |||||||    
T  2766852 ggtcaatgc 2766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 524
Target Start/End: Original strand, 4322714 - 4322785
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    ||||||||||||| | | |||||||||| ||| |||||| ||||||||||||||| ||||||||| ||||||    
T  4322714 caccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaatgtttct 4322785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 524
Target Start/End: Original strand, 35161624 - 35161694
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    ||||||||||||| | | |||||||||| ||| |||||| |||||||| |||||| ||||||||||||||||    
T  35161624 caccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggt-aaaactgaagcacaaacgtttct 35161694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 539
Target Start/End: Complemental strand, 23810906 - 23810840
Alignment:
Q  472 gagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaat 539  Q
    ||||||||| ||| ||||||| ||||||||||| || ||||||||||||||| ||||| ||| |||||    
T  23810906 gagttaacttgcgcaagttggacggtggtaaaa-ctgaagcacaaacgtttcagggaccgtggtcaat 23810840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 3515305 - 3515201
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    |||||||||||||||||  |||||||||||||||| |||||||||| ||| ||||||||||||||||||||||  ||||||||||||| | ||||||||     
T  3515305 tgcgtgacttaagtcacgcaccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgtagcacaaacgtttttcggacggtgg 3515206  T
Q  535 tcaat 539  Q
    |||||    
T  3515205 tcaat 3515201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 439 - 533
Target Start/End: Complemental strand, 30634200 - 30634104
Alignment:
Q  439 cgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    |||||||||||||||  ||||||||||||||||  ||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  30634200 cgtgacttaagtcacgcaccactgagcctctacgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtg 30634104  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 11599019 - 11599116
Alignment:
Q  437 tgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||||  |||||| |||||| | | |||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  11599019 tgcgtgacttaagtcatgcaccaccgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 11599116  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 33686631 - 33686534
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||| | | |||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  33686631 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaatgtttcttggacggt 33686534  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 532
Target Start/End: Complemental strand, 7014859 - 7014764
Alignment:
Q  439 cgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||  |||||| ||| | | | |||||||||| ||| |||||||||||||||||||||| |||||||||||||||| |||||||    
T  7014859 cgtgacttaagtcacgcaccactaagcatatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggt 7014764  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 439 - 533
Target Start/End: Original strand, 22605440 - 22605536
Alignment:
Q  439 cgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    |||||||||||||||  |||| |||||||||||||||||||||| ||| ||||| |||||||||||||||| ||| | | |||||| | ||||||||    
T  22605440 cgtgacttaagtcacgcaccattgagcctctacacgagttaacttgcgcaagttagccggtggtaaaaactgaagaatatacgttttttggacggtg 22605536  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 533
Target Start/End: Original strand, 49150562 - 49150642
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    ||||||||||||||| | || ||| ||| ||| || ||||||||||||||||||| ||||| |||||||||||||||||||    
T  49150562 caccactgagcctctgcgcgcgttgacttgcgcaaattggccggtggtaaaaacttaagcataaacgtttctgggacggtg 49150642  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 453 - 532
Target Start/End: Complemental strand, 43138718 - 43138639
Alignment:
Q  453 caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||| | | |||||||||| ||| || |||||||||| |||||||| |||||||||||||||| |||||||    
T  43138718 caccactgagcctatgcgcgagttaacttgcgcaaattggccggtgataaaaactgaagcacaaacgtttcttggacggt 43138639  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 30858499 - 30858583
Alignment:
Q  440 gtgacttaagtcaca--ccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgttt 522  Q
    ||||||||||||| |  ||| ||||||||||| |||||||||||||| ||||||||||||||| ||| || ||| ||||||||||    
T  30858499 gtgacttaagtcataaaccattgagcctctacgcgagttaactcgcgcaagttggccggtggtcaaagctgaagaacaaacgttt 30858583  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 529
Target Start/End: Original strand, 12926827 - 12926921
Alignment:
Q  437 tgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggac 529  Q
    |||| |||||||||||  ||||||||||||| | | |||||||||| ||| ||||||||   ||||||||||| |||||||||||||||| ||||    
T  12926827 tgcgcgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggctaatggtaaaaactgaagcacaaacgtttcttggac 12926921  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 541
Target Start/End: Complemental strand, 1671408 - 1671308
Alignment:
Q  442 gacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtgatcaat 539  Q
    ||||||||||||  |||||||||||||| | ||||||||| | || ||||||| ||||||| |||||| ||| |||||||||| | |||||||| |||||    
T  1671408 gacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgttt-ttggacggtggtcaat 1671310  T
Q  540 gc 541  Q
    ||    
T  1671309 gc 1671308  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 541
Target Start/End: Original strand, 15399069 - 15399175
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtga 534  Q
    ||||||| |||||||||  ||||| ||| |||| | ||||||||||  || |||||||  ||||||||||| | |||||||||||||| |||||||||      
T  15399069 tgcgtgagttaagtcacgcaccaccgagtctctgcgcgagttaacttacgcaagttggatggtggtaaaaattgaagcacaaacgtttatgggacggttg 15399168  T
Q  535 tcaatgc 541  Q
    |||||||    
T  15399169 tcaatgc 15399175  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 10308509 - 10308561
Alignment:
Q  472 gagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    ||||||||| ||| |||||||||||||||||| ||| |||||||||| |||||    
T  10308509 gagttaacttgcgcaagttggccggtggtaaacactgaagcacaaacatttct 10308561  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 533
Target Start/End: Original strand, 41871767 - 41871829
Alignment:
Q  471 cgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggtg 533  Q
    ||||||||||| || | ||||||||||||||| |||| ||| |||||||||| | ||||||||    
T  41871767 cgagttaactcacgcacgttggccggtggtaagaactgaagaacaaacgttttttggacggtg 41871829  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 437 - 507
Target Start/End: Complemental strand, 43147513 - 43147441
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaact 507  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43147513 tgcgtgacttaagtcacgcaccactgagcctctacacgagttaactcgcgcaagttggccggtggtaaaaact 43147441  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 1081975 - 1081878
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||| | | |||||||||| ||| |||||| ||||||||||||||| |||||||||||||||| |||||||    
T  1081975 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggt 1081878  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 12144046 - 12144143
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||| | |||||||||||| ||| ||||||| | ||| |||||||| |||||||||||||||| |||||||    
T  12144046 tgcgtgacttaagtcacgcaccactgagcctatgcacgagttaacttgcgcaagttggtcagtgttaaaaactgaagcacaaacgtttcttggacggt 12144143  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 437 - 532
Target Start/End: Complemental strand, 18172222 - 18172125
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||| | | | |||||||||| ||| ||||||| |||||||||||||| |||||||||||||||| |||||||    
T  18172222 tgcgtgacttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggt 18172125  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 437 - 541
Target Start/End: Complemental strand, 40034089 - 40033982
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggta-aaaactaaagcacaaacgtttctgggacggtg 533  Q
    |||| ||||||||||||  |||||||||||||||| |||||||||||||| ||||||| |||||||| |||||| ||| ||||| |||| | ||||||||    
T  40034089 tgcgagacttaagtcacgcaccactgagcctctacgcgagttaactcgcgcaagttggtcggtggtaaaaaactgaagaacaaatgttttttggacggtg 40033990  T
Q  534 atcaatgc 541  Q
     |||||||    
T  40033989 gtcaatgc 40033982  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 517
Target Start/End: Original strand, 2786732 - 2786814
Alignment:
Q  437 tgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaa 517  Q
    ||||||||||||||||  ||||||||||||| | | |||||||||| ||| |||||||||||||||||||||| |||||||||    
T  2786732 tgcgtgacttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaa 2786814  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 436 - 532
Target Start/End: Original strand, 34954047 - 34954145
Alignment:
Q  436 atgcgtgacttaagtca--caccactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    ||||||||||||||||   ||||||||||||| | | |||||||||| ||  |||||||| ||||||||||||| |||||||||||||||| |||||||    
T  34954047 atgcgtgacttaagtcgtgcaccactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttggacggt 34954145  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 524
Target Start/End: Complemental strand, 7662291 - 7662202
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttct 524  Q
    ||||||| |||||||||  |||||||||||| | | ||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||    
T  7662291 tgcgtgagttaagtcacgcaccactgagcctatgcgcgatttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttct 7662202  T

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Target: scaffold0051 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 437 - 532
Target Start/End: Original strand, 20093 - 20190
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgtttctgggacggt 532  Q
    |||||||||||||||||  |||||||||||| | | |||||||||| ||| |||||||||||||||||||| | |||||||||||||||| |||||||    
T  20093 tgcgtgacttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattgaagcacaaacgtttcttggacggt 20190  T

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Target: scaffold0753 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 3998 - 4085
Alignment:
Q  437 tgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgttt 522  Q
    |||||||||||||||||  |||||||||||| | | ||||||||||| || |||||| |||||||| | |||| ||| ||||||||||    
T  3998 tgcgtgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaacgttt 4085  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 522
Target Start/End: Original strand, 25597 - 25685
Alignment:
Q  436 atgcgtgacttaagtcac--accactgagcctctacacgagttaactcgcgtaagttggccggtggtaaaaactaaagcacaaacgttt 522  Q
    |||||||||||||| |||  |||||  ||||| | | ||||||||||| || ||||||||||||||| | |||| ||| ||||||||||    
T  25597 atgcgtgacttaaggcacgtaccacccagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaacgttt 25685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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