View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15503_high_3 (Length: 594)

Name: NF15503_high_3
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15503_high_3
NF15503_high_3
[»] chr6 (4 HSPs)
chr6 (18-367)||(33420408-33420756)
chr6 (399-512)||(33420263-33420376)
chr6 (423-497)||(33406777-33406847)
chr6 (450-512)||(33404833-33404895)
[»] chr5 (1 HSPs)
chr5 (140-187)||(24486644-24486690)
[»] chr4 (1 HSPs)
chr4 (140-201)||(56030097-56030159)
[»] chr2 (1 HSPs)
chr2 (124-201)||(35978605-35978683)
[»] chr8 (1 HSPs)
chr8 (124-165)||(10228133-10228174)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 33420756 - 33420408
Alignment:
Q  18 catcaacgacttaagttcaaccacttaatttaaactcaatgttttctatgcactaacattcaaaaaacgtatatcgtaaatatgaaatttacaatacata 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33420756 catcaacgatttaagttcaaccacttaatttaaactcaatgttttctatgcactaacattcaaaaaacgtatatcgtaaatatgaaatttacaatacata 33420657  T
Q  118 attttagttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgaccgatcaaattttacaaggaaaaaccgccgat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  33420656 attttagttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgaccgatcaaattttacacggaaaaacagccgat 33420557  T
Q  218 caaaagcaaaattgaggtgtttattaagcaacattttaatttttgttaaaagaaatgatggatgatataggcttttaaagcccaacaacatgggctctat 317  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  33420556 caaaagcaaaattgagatgtttattaagcaacattctaatttttgttaaaagagatgatggatgat-taggcttttaaagcccaacaacatgggctctat 33420458  T
Q  318 aacaagactcaacccaaacctcagcttcggagttaggttcggtttatcag 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33420457 aacaagactcaacccaaacctcagcttcggagttaggttcggtttatcag 33420408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 33420376 - 33420263
Alignment:
Q  399 attgaagataaggatttaaagccactccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaaa 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33420376 attgaagataaggatttaaagccactccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaaa 33420277  T
Q  499 acttcaaaatccaa 512  Q
    ||||||||||||||    
T  33420276 acttcaaaatccaa 33420263  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 33406847 - 33406777
Alignment:
Q  423 ctccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaa 497  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406847 ctccattcatttccctccttct----tcacaacccatttccactttcaccaaaaagattacatttttacactcaa 33406777  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 33404895 - 33404833
Alignment:
Q  450 cacaacccatttccactttcaccaaaaagattacatttttacactcaaaacttcaaaatccaa 512  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  33404895 cacaacccatttccactttcaccaaaaagattatatttttacactcaaaacttcaaaaaccaa 33404833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 24486644 - 24486690
Alignment:
Q  140 ctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgacc 187  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||    
T  24486644 ctcaaaattgctcacttgattaaaaa-agctggtcgaaagttacgacc 24486690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 56030159 - 56030097
Alignment:
Q  140 ctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgac-cgatcaaattttaca 201  Q
    ||||||||||||||  | ||| |||| || ||||||||||||||||| |||||||||||||||    
T  56030159 ctcaaaattgctcatcttattgaaaatagttggtcaaaagttacgactcgatcaaattttaca 56030097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 35978605 - 35978683
Alignment:
Q  124 gttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacga-ccgatcaaattttaca 201  Q
    |||| |||||||||| || ||||||| |||||||| |||||| || |  ||| ||||||||| ||||||||||||||||    
T  35978605 gttgctcaatagacaccttaaaattgttcacttgactaaaaaaagcttatcataagttacgacccgatcaaattttaca 35978683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 10228174 - 10228133
Alignment:
Q  124 gttgttcaatagacatctcaaaattgctcacttgattaaaaa 165  Q
    |||| |||||||||| || |||||||||||||||||||||||    
T  10228174 gttgctcaatagacacctaaaaattgctcacttgattaaaaa 10228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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