View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15503_low_1 (Length: 1008)

Name: NF15503_low_1
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15503_low_1
NF15503_low_1
[»] chr3 (4 HSPs)
chr3 (432-624)||(24929494-24929685)
chr3 (763-876)||(24929240-24929355)
chr3 (286-338)||(43148246-43148298)
chr3 (545-624)||(48989039-48989116)
[»] chr7 (4 HSPs)
chr7 (286-433)||(46290947-46291094)
chr7 (286-433)||(14238171-14238319)
chr7 (322-433)||(2836844-2836952)
chr7 (808-870)||(33249474-33249537)
[»] chr4 (1 HSPs)
chr4 (290-433)||(33572476-33572619)
[»] chr5 (1 HSPs)
chr5 (286-369)||(32658446-32658529)
[»] chr1 (1 HSPs)
chr1 (286-433)||(5041659-5041804)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 9e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 432 - 624
Target Start/End: Complemental strand, 24929685 - 24929494
Alignment:
Q  432 gcatatataagtgtagcattggccatcagtatttttgaaaaacctgctagcactaacttcttttgcatgaccaaaaatttaattaattaagctgttgtta 531  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |  | ||||||||||||||||||    
T  24929685 gcatatataactgtaacattggccatcagtatttttgaaagacctgctagcactaacttcttttgcatgaccaata-taaatttaattaagctgttgtta 24929587  T
Q  532 tttcggtctttcaaacataacatttgataaaactaacttaattaaatagtgtaataatctcacgatataaattcttttaaagctcgtcgtata 624  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  24929586 tttcggtcttttaaacataacatttgataaaactaacttaattaaatagtgtaataatcttaccatataaattcttttaaagctcgtcgtata 24929494  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 763 - 876
Target Start/End: Complemental strand, 24929355 - 24929240
Alignment:
Q  763 gtgcattaattcatatatgaaatccttttnnnnnnntttatatgactaagataatcaagttgtatattagttttttaatataaggatatttgagtctttt 862  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24929355 gtgcattaattcatatatgaaatccttttaaaaaaaattatatgactaagataatcaagttgtatattagttttttaatataaggatatttgagtctttt 24929256  T
Q  863 --aaaaaattgttgca 876  Q
      ||||||||||||||    
T  24929255 caaaaaaattgttgca 24929240  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 43148298 - 43148246
Alignment:
Q  286 tgtcccatcaaggctgtttggtgagcaaagaaataggagagagagattaaaaa 338  Q
    ||||||||||| |||||||||||| |||||||||||| ||| |||||||||||    
T  43148298 tgtcccatcaaagctgtttggtgaacaaagaaataggggagtgagattaaaaa 43148246  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 48989116 - 48989039
Alignment:
Q  545 aacataacatttgataaaactaacttaattaaatagtgtaataatctcacgatataaattcttttaaagctcgtcgtata 624  Q
    |||||| || |||||||||||| |||||||||||||||| |||||||  ||  |||| || |||||||| ||||||||||    
T  48989116 aacataccagttgataaaactagcttaattaaatagtgtgataatct--cgccataattttttttaaaggtcgtcgtata 48989039  T

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Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 286 - 433
Target Start/End: Complemental strand, 46291094 - 46290947
Alignment:
Q  286 tgtcccatcaaggctgtttggtgagcaaagaaataggagagagagattaaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaagaa 385  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||    |||||| || ||||||||| ||||||||| | | || ||||||    
T  46291094 tgtcccatcaaagctatttggtgagcaaagaaataggggagagagattaaaaacgtatgggccgcacatcaatattttttctcttcatggatgtgaagaa 46290995  T
Q  386 aggggacggaccattgttaatttggacatttctcaattatacccttgc 433  Q
    | |||| |  |||||| ||  |||||||||||||||||||||||||||    
T  46290994 acgggaggagccattggtatcttggacatttctcaattatacccttgc 46290947  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 286 - 433
Target Start/End: Original strand, 14238171 - 14238319
Alignment:
Q  286 tgtcccatcaaggctgtttggtgagcaaagaaataggagagagagat-taaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaaga 384  Q
    |||||||||||  ||||||||||||  |||||||||| |||| ||||  |||||| |||||| ||||| |||||||||||||||| | | |  |||||||    
T  14238171 tgtcccatcaaaactgtttggtgagagaagaaataggggagaaagataaaaaaattagtgggtcccatgtcaatattctttctctccatggaagcgaaga 14238270  T
Q  385 aaggggacggaccattgttaatttggacatttctcaattatacccttgc 433  Q
    ||||||| |  |  |||||| |||||||||||||||||| | |||||||    
T  14238271 aaggggaggagctgttgttattttggacatttctcaattttgcccttgc 14238319  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 2836952 - 2836844
Alignment:
Q  322 gagagagagattaaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaagaaaggggacggaccattgttaatttggacatttctcaa 421  Q
    |||||||||||||||||    || |||||| ||||| ||||||||||||| | |||| ||||||| |||| |  |  |||||| |||||  |||||||||    
T  2836952 gagagagagattaaaaac---tgagccccacatcaagattctttctcttcatgggtgtgaagaaacgggaggagctgttgttattttgggaatttctcaa 2836856  T
Q  422 ttatacccttgc 433  Q
    ||||||||||||    
T  2836855 ttatacccttgc 2836844  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 870
Target Start/End: Original strand, 33249474 - 33249537
Alignment:
Q  808 ctaagataatcaagttgtatattagttt-tttaatataaggatatttgagtcttttaaaaaatt 870  Q
    |||||| ||| || |||||||||||||| ||||||||||| |||||| |||||||| |||||||    
T  33249474 ctaagaaaataaaattgtatattagtttgtttaatataagaatattttagtcttttcaaaaatt 33249537  T

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Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 290 - 433
Target Start/End: Complemental strand, 33572619 - 33572476
Alignment:
Q  290 ccatcaaggctgtttggtgagcaaagaaataggagagagagattaaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaagaaaggg 389  Q
    ||||||| |||||||||||||  |||||||||| ||||||||| ||||||||||||| ||||  | |||||||||||||| | | |  ||||||||||||    
T  33572619 ccatcaaagctgtttggtgagagaagaaataggggagagagataaaaaatcagtgggtcccacgttaatattctttctctccatggaagcgaagaaaggg 33572520  T
Q  390 gacggaccattgttaatttggacatttctcaattatacccttgc 433  Q
    || |  |  |||||| |||||||||||||||||| | |||||||    
T  33572519 gaggagctgttgttattttggacatttctcaattttgcccttgc 33572476  T

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Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 286 - 369
Target Start/End: Complemental strand, 32658529 - 32658446
Alignment:
Q  286 tgtcccatcaaggctgtttggtgagcaaagaaataggagagagagattaaaaatcagtgggccccatatcaatattctttctct 369  Q
    ||||| ||||| |||||||||||||  |||||||||| ||||||||| | ||||||||||| |||| |||||||||||||||||    
T  32658529 tgtcctatcaaagctgtttggtgagagaagaaataggggagagagatcacaaatcagtgggtcccacatcaatattctttctct 32658446  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 433
Target Start/End: Original strand, 5041659 - 5041804
Alignment:
Q  286 tgtcccatcaaggctgtttggtgagcaaagaaataggagagagagattaaaaatcagtgggccccatatcaatattctttctcttctttggtgcgaagaa 385  Q
    ||||||||||| ||||||||||||   |||||||||  ||||||||| ||||||||||||| ||||  |||||||||| |||| ||| |   || |||||    
T  5041659 tgtcccatcaaagctgtttggtgaaagaagaaatagaggagagagataaaaaatcagtgggtcccaagtcaatattctctctc-tctct-cagcaaagaa 5041756  T
Q  386 aggggacggaccattgttaatttggacatttctcaattatacccttgc 433  Q
    |||||| |  | ||||||| |||||||||||||||||| | |||||||    
T  5041757 aggggaggagctattgttattttggacatttctcaattttgcccttgc 5041804  T

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