View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15503_low_11 (Length: 387)
Name: NF15503_low_11
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 8936278 - 8936642
Alignment:
| Q |
1 |
tagtagtatcaactattcttctctggtatgtttgatatggatcaacagaatcgtagatataagagctggtgaaattataattgtataagtaatagtgagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8936278 |
tagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagtaatagtgagg |
8936377 |
T |
|
| Q |
101 |
aatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaga |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8936378 |
aatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaga |
8936477 |
T |
|
| Q |
201 |
gttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgtttgtga |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8936478 |
gttaacattgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgttatgtttgtga |
8936577 |
T |
|
| Q |
301 |
ttcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
365 |
Q |
| |
|
|| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8936578 |
ttttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgcatcacatgtt |
8936642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 8959799 - 8960163
Alignment:
| Q |
1 |
tagtagtatcaactattcttctctggtatgtttgatatggatcaacagaatcgtagatataagagctggtgaaattataattgtataagtaatagtgagg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
8959799 |
tagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagtaatagtgagg |
8959898 |
T |
|
| Q |
101 |
aatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaga |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8959899 |
aatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaaa |
8959998 |
T |
|
| Q |
201 |
gttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgtttgtga |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
8959999 |
gttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgatatgtttccaa |
8960098 |
T |
|
| Q |
301 |
ttcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
365 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8960099 |
ttttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
8960163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 8924637 - 8925001
Alignment:
| Q |
1 |
tagtagtatcaactattcttctctggtatgtttgatatggatcaacagaatcgtagatataagagctggtgaaattataattgtataagtaatagtgagg |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
8924637 |
tagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagtaatagcgagg |
8924736 |
T |
|
| Q |
101 |
aatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacaga |
200 |
Q |
| |
|
|| || ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
8924737 |
aaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactcgacaataga |
8924836 |
T |
|
| Q |
201 |
gttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgtttgtga |
300 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||||||||||| |||||||||||| |||| | |||||| ||| |
|
|
| T |
8924837 |
gttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatattttatgttgttga |
8924936 |
T |
|
| Q |
301 |
ttcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
365 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8924937 |
ttttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
8925001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 91 - 365
Target Start/End: Original strand, 9335503 - 9335777
Alignment:
| Q |
91 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
190 |
Q |
| |
|
||||| ||||||||| |||| ||||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |
|
|
| T |
9335503 |
aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc |
9335602 |
T |
|
| Q |
191 |
cgacaacagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgat |
290 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| | || ||| |||| |||||||||||| |||||| |
|
|
| T |
9335603 |
tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttg |
9335702 |
T |
|
| Q |
291 |
atgtttgtgattcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
365 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||||||||| |||| | ||||| |||||||||||||||||| |
|
|
| T |
9335703 |
atgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatcacatgtt |
9335777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 9359247 - 9359515
Alignment:
| Q |
97 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
196 |
Q |
| |
|
||||||||| |||||||| |||||||| |||| | |||||||||| |||||||||||| || |||||||||| | ||||||||||||||| || || |
|
|
| T |
9359247 |
gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa |
9359346 |
T |
|
| Q |
197 |
cagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgttt |
296 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
9359347 |
cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt |
9359446 |
T |
|
| Q |
297 |
gtgattcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt |
365 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
9359447 |
gtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtt |
9359515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 86 - 362
Target Start/End: Complemental strand, 9307004 - 9306728
Alignment:
| Q |
86 |
taagtaatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtat |
185 |
Q |
| |
|
|||| ||||| |||| |||| |||||||||||| ||||||||||| ||||||||| | |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
9307004 |
taagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtat |
9306905 |
T |
|
| Q |
186 |
ttacccgacaacagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggat |
285 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| || |||||||||||||| |
|
|
| T |
9306904 |
ttacctgaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggat |
9306805 |
T |
|
| Q |
286 |
gtgatatgtttgtgattcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacat |
362 |
Q |
| |
|
|| ||||||| ||||| | |||||||| || | ||||||||||||||||||| ||||| | |||||||||| |||| |
|
|
| T |
9306804 |
gttttatgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataacat |
9306728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 97 - 338
Target Start/End: Complemental strand, 9475450 - 9475209
Alignment:
| Q |
97 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
196 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||| |||||||||| | ||||||||||||| |||||||||||| ||||||| ||| |||||||| | |
|
|
| T |
9475450 |
gaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaag |
9475351 |
T |
|
| Q |
197 |
cagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgttt |
296 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| | ||||||||||| ||| |||||||| |||||| ||||||| |
|
|
| T |
9475350 |
caaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgttt |
9475251 |
T |
|
| Q |
297 |
gtgattcttccacatgaagaaggtggacaatatgtttggtta |
338 |
Q |
| |
|
|||| | | |||||||||||||||||||||| |||||||||| |
|
|
| T |
9475250 |
gtgagtttgccacatgaagaaggtggacaatttgtttggtta |
9475209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 91 - 325
Target Start/End: Complemental strand, 9245219 - 9244985
Alignment:
| Q |
91 |
aatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc |
190 |
Q |
| |
|
||||| |||||| || ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
9245219 |
aatagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacc |
9245120 |
T |
|
| Q |
191 |
cgacaacagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgat |
290 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||| | |||||||||| |||||| |
|
|
| T |
9245119 |
cgaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacagcttgttgggtcattcataagtcgaaacggatgtttg |
9245020 |
T |
|
| Q |
291 |
atgtttgtgattcttccacatgaagaaggtggaca |
325 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9245019 |
atgttgctgatttttccacatgaagaaggtggaca |
9244985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 326
Target Start/End: Original strand, 8945879 - 8946097
Alignment:
| Q |
108 |
gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaacagagttaacg |
207 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || | ||| ||||| |
|
|
| T |
8945879 |
gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagcagctttaaca |
8945978 |
T |
|
| Q |
208 |
ttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgtttgtgattcttcc |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| |||||||| || | || |||||||| ||||||||| || |||| |||||| ||||| | || |
|
|
| T |
8945979 |
ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgctgattttgcc |
8946078 |
T |
|
| Q |
308 |
acatgaagaaggtggacaa |
326 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
8946079 |
acatgaagaagggggacaa |
8946097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 86 - 363
Target Start/End: Original strand, 9168393 - 9168667
Alignment:
| Q |
86 |
taagtaatagtgaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtat |
185 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| |||| ||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9168393 |
taagaaatagcgaggaatggtg---caatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtat |
9168489 |
T |
|
| Q |
186 |
ttacccgacaacagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggat |
285 |
Q |
| |
|
|||||| | |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || |||| |
|
|
| T |
9168490 |
ttaccccaaaacagacttagcgttgtgatgttgttttcacaggataactcgtacctcggatcaccacagtttgttggatcatttttaagtcggaacggat |
9168589 |
T |
|
| Q |
286 |
gtgatatgtttgtgattcttccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatg |
363 |
Q |
| |
|
|| ||||||| | ||| | |||||||||||||||||||| || |||||||| | |||| || |||||||||||| |
|
|
| T |
9168590 |
gttttatgtttctcattttgccacatgaagaaggtggacataatttttggttatcactattactagttgcatcacatg |
9168667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 97 - 338
Target Start/End: Complemental strand, 15912941 - 15912700
Alignment:
| Q |
97 |
gaggaatggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacccgacaa |
196 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||| ||||||||||| |||||||||||| || ||||||||| ||||||||| ||||| || || |
|
|
| T |
15912941 |
gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaaa |
15912842 |
T |
|
| Q |
197 |
cagagttaacgttgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaaaggatgtgatatgttt |
296 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||| | | ||| |||| |||||||||||| |||||| |||||| |
|
|
| T |
15912841 |
cagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgttg |
15912742 |
T |
|
| Q |
297 |
gtgattcttccacatgaagaaggtggacaatatgtttggtta |
338 |
Q |
| |
|
||||| | || |||||||||| ||||||| |||||| |||| |
|
|
| T |
15912741 |
ctgattttaccgcatgaagaagttggacaaaatgttttgtta |
15912700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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