View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_12 (Length: 368)
Name: NF15503_low_12
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 52445333 - 52444979
Alignment:
| Q |
14 |
tcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacaaaggagtggctgagcatgaatatcatatggatgtcatcaagaatgacattgt |
113 |
Q |
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| T |
52445333 |
tcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacgaaggagtggctgagcatggatatcatatggatgtcatcaagaatgacattat |
52445234 |
T |
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| Q |
114 |
gtacgagcatgacatggctgacaagtccgtggagcagtgcatgatgcaaattagggtcatgcacaggcgtggcagtgcaacaccttatctttgtgttagg |
213 |
Q |
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| T |
52445233 |
gtacgagcatgacatggctgacaagtacgtggagcagtgcatgatgcaaattaaggtcatgcacaggcgtggcagtgcaacaccttatctttgtgttagg |
52445134 |
T |
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| Q |
214 |
attgctaaggttcttgctcatgttgcgaagattgcggagctgcagaaccaagttttgaatctgcagcagcaagcactcactgaagatgcggtgagaggcc |
313 |
Q |
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| T |
52445133 |
attgctaaggtccgtgctcatgttgcgaagattgcggagctgcagaaccaagttttgaatctgcagcagcaagcactcactgaagatgcggtgagaggcc |
52445034 |
T |
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| Q |
314 |
tctttgccagcttagatgggaggctccatactactttcacgcagctctatgcctt |
368 |
Q |
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| T |
52445033 |
tctttgccagcttagatgggaggctccatgctactttcgcgcagctctatgcctt |
52444979 |
T |
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