View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_13 (Length: 365)
Name: NF15503_low_13
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 4496173 - 4495848
Alignment:
| Q |
29 |
atgaacatcattttgactaatatatgctgaagtctttcttggtacaaactcattaagtctatgtccattgtatgtaatatctccttgtacctgtttaata |
128 |
Q |
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| T |
4496173 |
atgaacatcattttgactaatatatgctgaagtctttcttggtacaaactcattaagtctatgtccattgtatgtaatatctccttgtacctgtttaata |
4496074 |
T |
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| Q |
129 |
aaaaataaattaagtatattatcaataatgtatacaattcaactcttttcatgttttcgtcatcataatta-----ttattccttaaattggcattaatt |
223 |
Q |
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| T |
4496073 |
aaaaataaattaagtatattatcaatcatgtatacaattcaactcttttcatgttttcgtcatcataattattatattattccttaaattggcattaatt |
4495974 |
T |
|
| Q |
224 |
attatataaaggtcaaattagtaattaactaaaattaaggggttggaatgtaccctcaattcagagtccaattttccagccaatgccagcaatagggtcg |
323 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4495973 |
attatataaagttcaaattagtaattaactaaaattaaggggttggaatgtaccctcaattcagagtccaattttccagccaatgccagcaatagggtcg |
4495874 |
T |
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| Q |
324 |
ttttccctgaagaagggggacctaac |
349 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4495873 |
ttttccctgaagaagggggacctaac |
4495848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 43464928 - 43464988
Alignment:
| Q |
279 |
tcaattcagagtccaattttccagccaatgccagcaatagggtcgttttccctgaagaagg |
339 |
Q |
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| T |
43464928 |
tcaagtcagtgtccaattttccagccaaagctagtaatagggtcgttttccctgaagaagg |
43464988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 43463030 - 43463082
Alignment:
| Q |
33 |
acatcattttgactaatatatgctgaagtctttcttggtacaaactcattaag |
85 |
Q |
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||||||||||| |||||||| |||||||||||||| || ||||| |||||||| |
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| T |
43463030 |
acatcattttggctaatataggctgaagtctttctagggacaaattcattaag |
43463082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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