View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_19 (Length: 270)
Name: NF15503_low_19
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 38629638 - 38629890
Alignment:
| Q |
18 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
117 |
Q |
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| T |
38629638 |
ttatactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaatagtgaattactcttcgaattatatatgttggattggatcatt |
38629737 |
T |
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| Q |
118 |
tcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatgcagtagaactagtccgattgcaagaac |
217 |
Q |
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| T |
38629738 |
tcaatatttactgcctatagatttggttcttatttggtgactaattattcggcagacctcttcaaattgtatgcagtagaactagtctgattgcaagaac |
38629837 |
T |
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| Q |
218 |
atttttacaggaaatacttgtatgaactatgaacccgaacattatgagaacaa |
270 |
Q |
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| T |
38629838 |
atttttacaggaaatacttgtatgaactatgaacccgaacattatgagaacaa |
38629890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 38696616 - 38696449
Alignment:
| Q |
21 |
tactcttcatcaattcaagggtatatgtgcaatccagtgtaatagaacatgaaa---tagtgaattact---cttcgaattatatatgttggattggatc |
114 |
Q |
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| T |
38696616 |
tactctttatcaattcaagtgtatatgtgaaatcaagtgtaataaaacgtgaaaaggtagtgaattactactctttgaattatgtctgttggat-----c |
38696522 |
T |
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| Q |
115 |
atttcaatatttactgcctacagatttggttcttatttggtgactaattattcagctgacctcttcaaattgtatg |
190 |
Q |
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| T |
38696521 |
ctttcaaaatttactccttacagatttggttgtt---tgatgacttattatccagttgacctcttcaaattgtatg |
38696449 |
T |
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