View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_21 (Length: 267)
Name: NF15503_low_21
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 35143317 - 35143552
Alignment:
| Q |
19 |
gtttgtcaaggaacaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggt |
118 |
Q |
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| T |
35143317 |
gtttgtcaaggaacaaagactctgtggaaggattccagagaatcggttccttcctaagcttaacatttgcaattgtcgccctaaccaatacggtattggt |
35143416 |
T |
|
| Q |
119 |
cctgagaatttattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatca |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |
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| T |
35143417 |
cctgagaatctattatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttcccgtttaagctattgttgcgcaatatca |
35143516 |
T |
|
| Q |
219 |
ataccttaagatcaagtaatgatcccattgatgatg |
254 |
Q |
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|||||||||| ||||| ||||||||||||||||||| |
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| T |
35143517 |
ataccttaagttcaagcaatgatcccattgatgatg |
35143552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 35 - 249
Target Start/End: Complemental strand, 38748764 - 38748550
Alignment:
| Q |
35 |
agactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaatttattat |
134 |
Q |
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||||||||||||||| ||||| |||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
38748764 |
agactctgcggaaggcttccattgaattggttctttcacaagcttaacatttgtaattgttgtcctaaccaatacggtattggtcctgagaatctattat |
38748665 |
T |
|
| Q |
135 |
ctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagatcaag |
234 |
Q |
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| T |
38748664 |
ctccaagatctagcatggtcagttctgtgcaatttttcaatgagaaaggtaacttccctgtcaagctattgttgcgcaatatcaataccttaattttaag |
38748565 |
T |
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| Q |
235 |
taatgatcccattga |
249 |
Q |
| |
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| T |
38748564 |
taatgatcccattga |
38748550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 37164549 - 37164327
Alignment:
| Q |
32 |
caaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaatttat |
131 |
Q |
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|||||||| |||||||| ||||||| || |||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||| |
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| T |
37164549 |
caaagactaagcggaaggcttccagataactggttacctcgtaagcttaacatttgtaattgttggcctaaccaataaggtattggtcctgagaatctat |
37164450 |
T |
|
| Q |
132 |
tatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagatc |
231 |
Q |
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||||||||||||||||||||| ||| |||| ||||||||||||||| | ||| || | |||||||||||||||||| || ||||| || |||||||| | |
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| T |
37164449 |
tatctccaagatctagcatgatcagttttgagcaatttttcaaggagacaggcaattaccctgttaagctattgttgcgcaatattaacaccttaagttt |
37164350 |
T |
|
| Q |
232 |
aagtaatgatcccattgatgatg |
254 |
Q |
| |
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| |||||||||||||||| |||| |
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| T |
37164349 |
atgtaatgatcccattgaggatg |
37164327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 37132093 - 37131869
Alignment:
| Q |
30 |
aacaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaattt |
129 |
Q |
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|
||||||||||||||||||| ||||| ||||| | ||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| | |
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| T |
37132093 |
aacaaagactctgcggaagacttccatagaattgattccttcgtaagcttaacatttgcatttgttgtcctaaccaatacggtattggtcctgtgaatct |
37131994 |
T |
|
| Q |
130 |
attatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaaga |
229 |
Q |
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|||||| || ||||||||||||| ||||| |||||||||||||||| | ||| | |||||| || |||||||| || |||||||||||||||| |
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| T |
37131993 |
attatcgcctagatctagcatgattgggtttttgcaatttttcaaggagacaggcagcttcccatagaaactattgttgcgcaatatcaataccttaaat |
37131894 |
T |
|
| Q |
230 |
tcaagtaatgatcccattgatgatg |
254 |
Q |
| |
|
|| ||||||||||||||||| |||| |
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| T |
37131893 |
tccagtaatgatcccattgaggatg |
37131869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 249
Target Start/End: Complemental strand, 37139173 - 37138955
Alignment:
| Q |
31 |
acaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaattta |
130 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||| |||||| |||| |||||| ||||||||||| || ||| || |
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| T |
37139173 |
acaaagactcagcggaaggcttccagagaatcggttccttcgtaagcttagcatttgtaattgtcttcctagccaatatggtattggtccagaaaatcta |
37139074 |
T |
|
| Q |
131 |
ttatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagat |
230 |
Q |
| |
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|||||||| ||||||||||||| || | |||||||||||||||||| | ||| |||||||| | || || ||||| || |||||||||||| ||| | |
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| T |
37139073 |
ttatctcctagatctagcatgatcatttctgtgcaatttttcaaggagagaggcaacttcccactgaacctgttgttccgcaatatcaatacccgaagtt |
37138974 |
T |
|
| Q |
231 |
caagtaatgatcccattga |
249 |
Q |
| |
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||||||||||||||||||| |
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| T |
37138973 |
caagtaatgatcccattga |
37138955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 3023032 - 3023255
Alignment:
| Q |
31 |
acaaagactctgcggaaggattccagagaatcggttctttcgtaagcttaacatttgcaattgttgccctaaccaatacggtattggtcctgagaattta |
130 |
Q |
| |
|
||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||| || |
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| T |
3023032 |
acaaagactctgcggaaggcttccattgaaatggttctttcgtaagcttaacatttgtaattgttgtcctagccaatacggtattggtcccgagaatcta |
3023131 |
T |
|
| Q |
131 |
ttatctccaagatctagcatgaccaggtttgtgcaatttttcaaggataaaggtaacttccctgttaagctattgtttcgtaatatcaataccttaagat |
230 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||||||| | |
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| T |
3023132 |
ttatctccaagatctagcatgatcagttctgtgcaatttttcaatgagaaaggtaacttccctgtcaagctattgttgcgcaatatcaataccttaattt |
3023231 |
T |
|
| Q |
231 |
caagtaatgatcccattgatgatg |
254 |
Q |
| |
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|||||||||||||||||| |||| |
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|
| T |
3023232 |
taagtaatgatcccattgaggatg |
3023255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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