View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15503_low_27 (Length: 205)
Name: NF15503_low_27
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_27 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 22759736 - 22759557
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22759736 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
22759637 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22759636 |
caagaagaagaacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
22759557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 2085467 - 2085294
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2085467 |
gagagaagaaaatggttgtgtagtaacttgctggcaggataggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
2085368 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgag |
184 |
Q |
| |
|
| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2085367 |
ccagaagaagaagggaatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgag |
2085294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 2367532 - 2367353
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2367532 |
gagagaagaaaatggttgtgtagtaacttgctgacatgacaggtctttgttttcaacaacagcttggagagctaggaagtaattaaaactaattttcaag |
2367433 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2367432 |
caagaggaagaagcgaatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagggttttgagggtttt |
2367353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 1692108 - 1691929
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
1692108 |
gagagaagaaaatggttgtgtagtaacttgctagcaggacacgtctttgttttcaacaacagctttgagagctaggaagtaattaatactaattttcaag |
1692009 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1692008 |
caagaagaagaacgctgtattagaaagaagaaaaatattatatgaattgaagaaatgatgggtagagatttgagggtttt |
1691929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 42299476 - 42299297
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42299476 |
gagagaagaaaatggatgtatagtaacttgctggcaggatatgtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
42299377 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
|||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42299376 |
caagaaaaagaatggaatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
42299297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 23482548 - 23482500
Alignment:
| Q |
15 |
gaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgtttt |
63 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||| |||||||||||| |
|
|
| T |
23482548 |
gaagaaaatggttgtgtattaacctgctggcaggacaggtctttgtttt |
23482500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 23910398 - 23910219
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
23910398 |
gagagaagaaaatggttgtgtagtaacttgctagcaggacacgtctttgttttcaacaacagctttgagagctaggaagtaattaatactaattttcaag |
23910299 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
23910298 |
caagaagaagaacgctgtattagaaagaagaaaaatattatatgaattgaagaaatgatgggtatagatttgagggtttt |
23910219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 34266565 - 34266386
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34266565 |
gagagaagaaaatggttgtgtagtaacttgctggcaggacaaatctttgttttcaacaacaacttggagagctaggaagtagttaagactaattttcaag |
34266466 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34266465 |
caagaagaaaaagggaatattagaaagaagaaaaatatgatatgaagtgaagagatgatgggtagagttttgagggtttt |
34266386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 77100 - 77279
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77100 |
gagagaagaaaatggttgtgtagtagcttactggcaggacaggtatttcttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
77199 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
77200 |
caagaagaagaagagaatattataaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
77279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 33297614 - 33297793
Alignment:
| Q |
11 |
gagagaagaaaatggttgtgtagtaacttgctagcaggaatggtctttgttttcaacaacagcttggagagctaggaagtaattaagactaattttcaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33297614 |
gagagaagaaaatggttgtgtagtaacttgctgtcaggacaggtctttgttttcaacaacaacttggagagctaggaagtaattaagactaattttcaag |
33297713 |
T |
|
| Q |
111 |
caagaagaaggacgctatattagaaagaagaaaaatatgatatgaagtgaagaaatgatgggtagagttttgagggtttt |
190 |
Q |
| |
|
||||||||| | | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
33297714 |
caagaagaaaaagggaatattagaaagaaaaaaaatatgatatgaagtgaagagatgatgggtagagttttaagggtttt |
33297793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University