View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_3 (Length: 594)
Name: NF15503_low_3
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 33420756 - 33420408
Alignment:
| Q |
18 |
catcaacgacttaagttcaaccacttaatttaaactcaatgttttctatgcactaacattcaaaaaacgtatatcgtaaatatgaaatttacaatacata |
117 |
Q |
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| T |
33420756 |
catcaacgatttaagttcaaccacttaatttaaactcaatgttttctatgcactaacattcaaaaaacgtatatcgtaaatatgaaatttacaatacata |
33420657 |
T |
|
| Q |
118 |
attttagttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgaccgatcaaattttacaaggaaaaaccgccgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
33420656 |
attttagttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgaccgatcaaattttacacggaaaaacagccgat |
33420557 |
T |
|
| Q |
218 |
caaaagcaaaattgaggtgtttattaagcaacattttaatttttgttaaaagaaatgatggatgatataggcttttaaagcccaacaacatgggctctat |
317 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33420556 |
caaaagcaaaattgagatgtttattaagcaacattctaatttttgttaaaagagatgatggatgat-taggcttttaaagcccaacaacatgggctctat |
33420458 |
T |
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| Q |
318 |
aacaagactcaacccaaacctcagcttcggagttaggttcggtttatcag |
367 |
Q |
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| T |
33420457 |
aacaagactcaacccaaacctcagcttcggagttaggttcggtttatcag |
33420408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 33420376 - 33420263
Alignment:
| Q |
399 |
attgaagataaggatttaaagccactccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaaa |
498 |
Q |
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| T |
33420376 |
attgaagataaggatttaaagccactccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaaa |
33420277 |
T |
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| Q |
499 |
acttcaaaatccaa |
512 |
Q |
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| T |
33420276 |
acttcaaaatccaa |
33420263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 423 - 497
Target Start/End: Complemental strand, 33406847 - 33406777
Alignment:
| Q |
423 |
ctccattcatttccctccttctatcatcacaacccatttccactttcaccaaaaagattacatttttacactcaa |
497 |
Q |
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| T |
33406847 |
ctccattcatttccctccttct----tcacaacccatttccactttcaccaaaaagattacatttttacactcaa |
33406777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 33404895 - 33404833
Alignment:
| Q |
450 |
cacaacccatttccactttcaccaaaaagattacatttttacactcaaaacttcaaaatccaa |
512 |
Q |
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| T |
33404895 |
cacaacccatttccactttcaccaaaaagattatatttttacactcaaaacttcaaaaaccaa |
33404833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 24486644 - 24486690
Alignment:
| Q |
140 |
ctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgacc |
187 |
Q |
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| T |
24486644 |
ctcaaaattgctcacttgattaaaaa-agctggtcgaaagttacgacc |
24486690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 56030159 - 56030097
Alignment:
| Q |
140 |
ctcaaaattgctcacttgattaaaaagagatggtcaaaagttacgac-cgatcaaattttaca |
201 |
Q |
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| T |
56030159 |
ctcaaaattgctcatcttattgaaaatagttggtcaaaagttacgactcgatcaaattttaca |
56030097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 35978605 - 35978683
Alignment:
| Q |
124 |
gttgttcaatagacatctcaaaattgctcacttgattaaaaagagatggtcaaaagttacga-ccgatcaaattttaca |
201 |
Q |
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|||| |||||||||| || ||||||| |||||||| |||||| || | ||| ||||||||| |||||||||||||||| |
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| T |
35978605 |
gttgctcaatagacaccttaaaattgttcacttgactaaaaaaagcttatcataagttacgacccgatcaaattttaca |
35978683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 10228174 - 10228133
Alignment:
| Q |
124 |
gttgttcaatagacatctcaaaattgctcacttgattaaaaa |
165 |
Q |
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| T |
10228174 |
gttgctcaatagacacctaaaaattgctcacttgattaaaaa |
10228133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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