View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15503_low_4 (Length: 553)

Name: NF15503_low_4
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15503_low_4
NF15503_low_4
[»] chr6 (3 HSPs)
chr6 (65-553)||(8858056-8858532)
chr6 (379-553)||(8853213-8853387)
chr6 (18-71)||(8857983-8858036)


Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 65 - 553
Target Start/End: Original strand, 8858056 - 8858532
Alignment:
Q  65 agtgtaccgtagaagttcccttatattttaccctctttccaaagcatatggaaaatgacataccacttttccaaaatgaagttaagttgatgatccattt 164  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8858056 agtgtaccatagaagttcccttatattttaccctctttccaaagcatatggaaaatgacataccacttttccaaaatgaagttaagttgatgatccattt 8858155  T
Q  165 gaaagtaattttgcaaccatatccaataaaatctatattgcgacctagactaaaaaataatttaaaatttaaaattcaatgagtataatagatattctac 264  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8858156 gaaagtaattttgcaaccatatccaataaaatctataatgcgacctagactaaaaaataatttaaaatttaaaattcaatgagtataatagatattctac 8858255  T
Q  265 nnnnnnnnnnnaatcaacaaaatttattaaacatagtctacacaagaagcagacggtcagacataaagataaacatacaaattcgggcgcagtatatagg 364  Q
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8858256 tttttttttttaatcaacaaaatttattaaacatagtctacacaagaagcagacggtcagacataaagataaacatacaaatacgggcgcagtatatagg 8858355  T
Q  365 aggaatagtttgggatcccaaatacactcgtggaataagtttgggtaggccttcaatttaatcaaactccacttccaagacgacacatttatctcatcaa 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  8858356 aggaatagtttgggatcccaaatacactcgtggaataagtttgggtaggccttcaatttaatcaaactccacttccaagacgacacatttatc------- 8858448  T
Q  465 ccatttcatcaatctcctttatacaatttttaaaaaccctctcgattttataatttgaaatgatccaaattgttgcatgccaaatttgc 553  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8858449 -----tcatcaatctcctttatacaatttttaaaaaccctctcgattttataatttgaaatgatccaaattgttgcatgccaaatttgc 8858532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 379 - 553
Target Start/End: Original strand, 8853213 - 8853387
Alignment:
Q  379 atcccaaatacactcgtggaataagtttgggtaggccttcaatttaatcaaactccacttccaagacgacacatttatctcatcaaccatttcatcaatc 478  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  8853213 atcccaactccactcgtagaataagtttgggtaggtcttcaatttactcaaactccgcttccaagacaacacatttatcccatcaaccatttcatcaatc 8853312  T
Q  479 tcctttatacaatttttaaaaaccctctcgattttataatttgaaatgatccaaattgttgcatgccaaatttgc 553  Q
    || ||||||||||||| ||||| ||||||  ||||||||||  ||||||||||||||||| ||||||||||||||    
T  8853313 tcttttatacaattttaaaaaagcctctcatttttataattctaaatgatccaaattgttccatgccaaatttgc 8853387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 8857983 - 8858036
Alignment:
Q  18 aaaaggaatacaacaatgcaatttagtacatgttcaaacataaagaaagtgtac 71  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  8857983 aaaaggaatacaacaatgcaatttagtgcatgttcaaacatgaagaaagagtac 8858036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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