View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15503_low_5 (Length: 504)
Name: NF15503_low_5
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 52446093 - 52445741
Alignment:
| Q |
1 |
gattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgatt |
100 |
Q |
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| T |
52446093 |
gattgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactatacattatgatt |
52445994 |
T |
|
| Q |
101 |
gtgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcacggttcaaa |
200 |
Q |
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| T |
52445993 |
gtgaacagagtatcaactcgaccaaagcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatcatacgtgtcagggttcaaa |
52445902 |
T |
|
| Q |
201 |
ctcatatcatgaggttcgacctagaaattttgctatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaa |
300 |
Q |
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| T |
52445901 |
ctcatatcatgaggttcgacctagaaattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactcaatagtttgtaagaagaaa |
52445802 |
T |
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| Q |
301 |
ttaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
361 |
Q |
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| T |
52445801 |
ttaaacatattgatattcaattaaaggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 52447031 - 52446722
Alignment:
| Q |
2 |
attgaaattgtgaatcatccataaattgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattg |
101 |
Q |
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| T |
52447031 |
attgaaattgt-aatcatccctaaattaaaacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattg |
52446933 |
T |
|
| Q |
102 |
tgaacagagcatcaactcaaccaaagcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtca |
191 |
Q |
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| T |
52446932 |
tggatagagcatcaactcaattgaagcattatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatca |
52446841 |
T |
|
| Q |
192 |
cggttcaaactcatatcatgaggttcgacctagaaattttgctatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgt |
291 |
Q |
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||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||| || ||||||| || |||| ||||| |
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| T |
52446840 |
aggttcaaactcatatcatgaggtccgacctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgt |
52446741 |
T |
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| Q |
292 |
aagaagaaattaaacatat |
310 |
Q |
| |
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| ||| ||||||||||||| |
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| T |
52446740 |
atgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 359 - 458
Target Start/End: Complemental strand, 52445451 - 52445350
Alignment:
| Q |
359 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
456 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
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| Q |
457 |
at |
458 |
Q |
| |
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|| |
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| T |
52445351 |
at |
52445350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 227 - 356
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
227 |
attttgctatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
326 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
|
| Q |
327 |
gataaggtgtgtataaatatgtctttaatt |
356 |
Q |
| |
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|||||| ||||||| |||||| ||||||| |
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| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 457 - 503
Target Start/End: Complemental strand, 52446149 - 52446103
Alignment:
| Q |
457 |
atcaataataaaacgaaacaatctaaaaagaacaaaaccagagacac |
503 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
52446149 |
atcaatgataaaatgaaacaatctaaaaagaacaaaaccagagacac |
52446103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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