View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15503_low_8 (Length: 429)
Name: NF15503_low_8
Description: NF15503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15503_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 38630536 - 38630116
Alignment:
| Q |
1 |
gtatgtatatgtgttcttttttcagccttttccgtggtttagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38630536 |
gtatgtatatgtgttcttttttcagccttttccgtggtttagaatagcatattttgtgctctggagctgctcctacgttattttccaatgggttatccac |
38630437 |
T |
|
| Q |
101 |
gcatgtggttccacatggtaagatgtaaatttaaatgtaactgtatttttaccttctttgtatcatcagcagcagctaaaactttcttcctctaacaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38630436 |
gcatgtggttccacatggtaagatgtaaatttaaatgtaactgtatttttaccttctttgtatcatcagcagcagctaaagctttcttcctctaacaggt |
38630337 |
T |
|
| Q |
201 |
ggccatacccatttcttgagcttaatattccatgggctcccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38630336 |
ggccatacccatttcttgagcttaatattccatgggctcccttatggtaagatatactattaacatacaaatgccatgtcttctccatttttctttctat |
38630237 |
T |
|
| Q |
301 |
acaaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtga |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38630236 |
accaaatacttgttattctcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtga |
38630137 |
T |
|
| Q |
401 |
aaaccaaaatcaatattcttc |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38630136 |
aaaccaaaatcaatattcttc |
38630116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 38695745 - 38695825
Alignment:
| Q |
319 |
tcactaatgtatcttgtctataggtatatctgcatggcgctagttcacataccttgctacggcatctattcattgatagtgaaa |
402 |
Q |
| |
|
|||| |||| ||| |||||||||| |||||| | ||||||||||||||||| ||||||| ||| |||| ||||||||||||| |
|
|
| T |
38695745 |
tcaccaatgcatcgtgtctatagg---atctgccttgcgctagttcacataccctgctacgacatgtatttattgatagtgaaa |
38695825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University