View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_high_11 (Length: 239)
Name: NF15504_high_11
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 23213518 - 23213739
Alignment:
| Q |
18 |
aattatgtacacacacatagcagctagtaggtgagaatctatggggcatccaacattggctaagtttactaacaacataggatattttaggcctagagtg |
117 |
Q |
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| T |
23213518 |
aattatgtacacacacatagcagctagtaggtgagaatctatggggcatccaacattggctaagtttactaacaacataggatattttaggcctagagtg |
23213617 |
T |
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| Q |
118 |
tgaggtataggagttcccaatcgtgtaactaaactctacaaaactgatttgtaaaatcatagacgtctcctagttacaaagtcatttataagtcatatct |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213618 |
tgaggtataggagttcccaatcgtgtaactcaactctacaaaactgatttgtaaaatcatagacgtctcctagttacaaagtcatttataagtcatatct |
23213717 |
T |
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| Q |
218 |
catcatatgttagactattaac |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
23213718 |
catcatatgttagactattaac |
23213739 |
T |
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