View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_1 (Length: 598)
Name: NF15504_low_1
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 369 - 583
Target Start/End: Complemental strand, 40841172 - 40840958
Alignment:
| Q |
369 |
catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg |
468 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40841172 |
catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcatatg |
40841073 |
T |
|
| Q |
469 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgggccttgtttggaat |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40841072 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
40840973 |
T |
|
| Q |
569 |
gagtatggatgggac |
583 |
Q |
| |
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|| |||||||||||| |
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| T |
40840972 |
gaatatggatgggac |
40840958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 369 - 583
Target Start/End: Complemental strand, 40845574 - 40845360
Alignment:
| Q |
369 |
catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg |
468 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
40845574 |
catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcatcatatg |
40845475 |
T |
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| Q |
469 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgggccttgtttggaat |
568 |
Q |
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| T |
40845474 |
gttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
40845375 |
T |
|
| Q |
569 |
gagtatggatgggac |
583 |
Q |
| |
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|| |||||||||||| |
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| T |
40845374 |
gaatatggatgggac |
40845360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 40845932 - 40845753
Alignment:
| Q |
42 |
gttccatgaaccttccagaaaataatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgt |
141 |
Q |
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||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40845932 |
gttccataaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccccggttttgatgactctggttattctgt |
40845833 |
T |
|
| Q |
142 |
tgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgtcgtgtgtg |
221 |
Q |
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| T |
40845832 |
tgaagaacttggtcatcatgcagggtattatagtcttcctcattccaaagctgctaggtaaatgttttatgttgtgtgtg |
40845753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 379 - 583
Target Start/End: Complemental strand, 40852040 - 40851836
Alignment:
| Q |
379 |
tttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatggttaaccgga |
478 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||| |
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| T |
40852040 |
tttccattgaacaatttgttatgtcgattgcaggatgttctattttttctttgaatctcgaaacactaaggatgaccctgttgttatatggttaactgga |
40851941 |
T |
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| Q |
479 |
ggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgggccttgtttggaatgagtatggat |
578 |
Q |
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|| || |||||| ||||||||||||| |||| ||||||||||| || ||| | || || ||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
40851940 |
gggccaggatgcagcagtgaaattgctatgttctatgaaaatggtccttttaaattttccaaggataagaacttgtcccttgtttggaatgaatatggat |
40851841 |
T |
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| Q |
579 |
gggac |
583 |
Q |
| |
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||||| |
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| T |
40851840 |
gggac |
40851836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 40841377 - 40841240
Alignment:
| Q |
42 |
gttccatgaaccttccagaaaataatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgt |
141 |
Q |
| |
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||||||| ||| | ||||| ||| |||||| ||||||| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40841377 |
gttccataaacataccagagaatgatcctcttgtcctctatcgaaacattgtggagaaaaagttcactttccctggttttgatgaccctggttattctgt |
40841278 |
T |
|
| Q |
142 |
tgaagaacttggtcatcatgcagggtattatagtcttc |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40841277 |
tgaagaacttggtcatcatgcagggtattatagtcttc |
40841240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 40852689 - 40852542
Alignment:
| Q |
56 |
ccagaaaataatcctcatgtcctccatggaaacattgtggagaagaagttcactttccctggttttgatgactctggttattctgttgaagaacttggtc |
155 |
Q |
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||||| ||| |||||||| | || |||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
40852689 |
ccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcactttccctggttttgttgactctggtgcttctgttgaagaacttggtc |
40852590 |
T |
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| Q |
156 |
atcatgcagggtattatagtcttcctcattccaaagctgctaggtaaa |
203 |
Q |
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|||||||||| |||||| |||||||||||||||||||||| ||||||| |
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| T |
40852589 |
atcatgcaggctattatcgtcttcctcattccaaagctgcaaggtaaa |
40852542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 368
Target Start/End: Complemental strand, 40845706 - 40845602
Alignment:
| Q |
268 |
aaagttcaagattattaataaattcctctnnnnnnnnggttattaatcaatgttttttattttaaaagag----gacagacactaatccgcttttctgta |
363 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
40845706 |
aaagttcaagattattaataaattcctctaaaaaaaaggttattaatcaatgttttttattttaaaagtggacagacagacactaatatgcttttctgta |
40845607 |
T |
|
| Q |
364 |
tatta |
368 |
Q |
| |
|
||||| |
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|
| T |
40845606 |
tatta |
40845602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 410 - 519
Target Start/End: Original strand, 21114572 - 21114684
Alignment:
| Q |
410 |
aggatgttctattttttctttgaatctcgaaacagt---aaggatgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct |
506 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||| | ||||||||||| || || ||||||| || |||||||| || |||||||||||| | || | |
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| T |
21114572 |
aggatgttctattttttctttgaatcacgagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaactagctt |
21114671 |
T |
|
| Q |
507 |
tgttttatgaaaa |
519 |
Q |
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||||||||||||| |
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| T |
21114672 |
tgttttatgaaaa |
21114684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 522
Target Start/End: Complemental strand, 19577713 - 19577598
Alignment:
| Q |
410 |
aggatgttctattttttctttgaatctcgaaacagtaagga---tgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct |
506 |
Q |
| |
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||||||||||| |||||||||||||| || ||| |||||| ||||||||| ||| | ||||| || ||||| ||||| || |||||||| | || | |
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| T |
19577713 |
aggatgttctactttttctttgaatcacgcaaccataaggaagatgaccctgttgtcatttggttgactggaggacctggctgtagcagtgaattggctt |
19577614 |
T |
|
| Q |
507 |
tgttttatgaaaatgg |
522 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
19577613 |
tgttttacgaaaatgg |
19577598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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