View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_13 (Length: 238)
Name: NF15504_low_13
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23213824 - 23214050
Alignment:
| Q |
1 |
gagtaaaaatcatcatagtacagtaaatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattctagttttggtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213824 |
gagtaaaaatcatcatagtacagtaaatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattctagttttggtat |
23213923 |
T |
|
| Q |
101 |
tcataaaaccgagaatacaacgtaaaaacactacagttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattccttttcaaaagt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213924 |
tcataaaaccgagaatacaacgtaaaagcactacagttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattccttttcaaaagt |
23214023 |
T |
|
| Q |
201 |
acaatacaatcactaattgatattcat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
23214024 |
acaatacaatcactaattgatattcat |
23214050 |
T |
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