View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_14 (Length: 218)
Name: NF15504_low_14
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 34 - 202
Target Start/End: Original strand, 26677680 - 26677846
Alignment:
| Q |
34 |
ttcatagtttattagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggcaaattccaccac |
133 |
Q |
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| T |
26677680 |
ttcatagtttataagcgaagataatactcacttaatcggtttttatgttcaaccacaaattataaaatcatgtacattttctgcaggtaaattccaccac |
26677779 |
T |
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| Q |
134 |
cggttcatttatttcttcgtaaagttcacgttcgttgttcaacttttcctcactgttggaatatgatgt |
202 |
Q |
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| T |
26677780 |
cggttcatttatttcttcgtaaagttcacgt--gttgttcaacttttcctcactgttggaatatgatgt |
26677846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 26688524 - 26688391
Alignment:
| Q |
71 |
ggtttttatgttcaaccacaaattataaaatcatgtacattctaagcaggcaaattccaccaccggttcatttatttcttcgtaaagttcacgttcg--t |
168 |
Q |
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| T |
26688524 |
ggtttttatgctcaaccacaaattataaaatcatgtatatttcctgcatgtaaattccaccaccggttcatttatttcttcgtaaagttcacgttcgaat |
26688425 |
T |
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| Q |
169 |
tgttcaacttttcctcactgttggaatatgatgt |
202 |
Q |
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| T |
26688424 |
tattcaacttttccttactgttggaatgtgatgt |
26688391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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