View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15504_low_2 (Length: 523)

Name: NF15504_low_2
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15504_low_2
NF15504_low_2
[»] chr2 (11 HSPs)
chr2 (18-300)||(15015318-15015600)
chr2 (18-289)||(15025881-15026156)
chr2 (300-494)||(10416447-10416641)
chr2 (300-494)||(808177-808370)
chr2 (300-494)||(4698404-4698597)
chr2 (179-289)||(15021330-15021440)
chr2 (300-466)||(2588375-2588533)
chr2 (18-82)||(15021445-15021509)
chr2 (323-367)||(45333312-45333356)
chr2 (300-367)||(44324744-44324810)
chr2 (299-367)||(35111011-35111078)
[»] chr3 (8 HSPs)
chr3 (299-512)||(28058008-28058221)
chr3 (299-512)||(28068433-28068646)
chr3 (299-496)||(28104318-28104515)
chr3 (300-494)||(5705065-5705258)
chr3 (300-481)||(19435537-19435710)
chr3 (312-417)||(7688436-7688541)
chr3 (323-367)||(11201244-11201288)
chr3 (300-367)||(34494055-34494121)
[»] chr6 (10 HSPs)
chr6 (300-488)||(27527758-27527946)
chr6 (300-494)||(33063617-33063810)
chr6 (313-494)||(30130844-30131025)
chr6 (323-494)||(33056138-33056312)
chr6 (300-481)||(28041236-28041408)
chr6 (312-415)||(15969963-15970066)
chr6 (300-367)||(25477665-25477730)
chr6 (326-466)||(6952740-6952881)
chr6 (300-367)||(22014636-22014702)
chr6 (323-367)||(14011688-14011732)
[»] scaffold0713 (1 HSPs)
scaffold0713 (299-494)||(1217-1412)
[»] chr1 (11 HSPs)
chr1 (300-494)||(14650774-14650969)
chr1 (300-494)||(14654774-14654969)
chr1 (300-494)||(14660565-14660760)
chr1 (300-494)||(16104706-16104899)
chr1 (323-492)||(19656911-19657080)
chr1 (300-494)||(16101248-16101443)
chr1 (300-493)||(17478215-17478407)
chr1 (300-481)||(29287704-29287877)
chr1 (300-364)||(47050059-47050122)
chr1 (300-367)||(17652807-17652873)
chr1 (418-481)||(47050159-47050222)
[»] chr5 (4 HSPs)
chr5 (300-488)||(27197780-27197968)
chr5 (300-494)||(5518975-5519168)
chr5 (300-494)||(42785992-42786185)
chr5 (302-466)||(15599370-15599535)
[»] chr8 (4 HSPs)
chr8 (300-494)||(28602614-28602807)
chr8 (300-491)||(4706151-4706341)
chr8 (298-494)||(15925442-15925637)
chr8 (323-367)||(18983075-18983119)
[»] chr4 (5 HSPs)
chr4 (312-494)||(30873901-30874084)
chr4 (323-451)||(5358125-5358254)
chr4 (312-481)||(27560639-27560801)
chr4 (299-395)||(51534234-51534328)
chr4 (300-367)||(18693730-18693796)
[»] scaffold0654 (2 HSPs)
scaffold0654 (300-494)||(3958-4150)
scaffold0654 (300-494)||(5310-5504)
[»] scaffold0014 (1 HSPs)
scaffold0014 (300-494)||(115263-115456)
[»] chr7 (4 HSPs)
chr7 (300-494)||(28804061-28804254)
chr7 (300-494)||(26525299-26525492)
chr7 (294-364)||(18057979-18058048)
chr7 (323-367)||(36263730-36263774)
[»] scaffold0002 (4 HSPs)
scaffold0002 (302-466)||(406455-406618)
scaffold0002 (300-393)||(10306-10398)
scaffold0002 (378-493)||(412530-412645)
scaffold0002 (302-466)||(423827-423989)
[»] scaffold0012 (1 HSPs)
scaffold0012 (298-482)||(233052-233237)
[»] scaffold0406 (1 HSPs)
scaffold0406 (300-367)||(4162-4227)
[»] scaffold0007 (1 HSPs)
scaffold0007 (323-367)||(61212-61256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (326-367)||(76608-76649)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 15015600 - 15015318
Alignment:
Q  18 aattcttgcttgcctttttcgttcaatcaaagttggctaaatagtcttcaatcaattacaatgatcacagccagatgtcaactgatccgcatgatatgaa 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15015600 aattcttgcttgcctttttcgttcaatcaaagttagctaaatagtcttcaatcaattacaatgatcacagccagatgtcaacagatccgcatgatatgaa 15015501  T
Q  118 taacacaaaaatggaatcaaattgcagcaagggaaaatgacaaatccgttctaacagaatgtaaagcgaaggaaattagtgaaaatgctatggcaagcta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15015500 taacacaaaaatggaatcaaattgcagcaagggaaaatgacaaatccgttctaacagaatgtaaagcgaaggaaattagtgaaaatgctatggcaagcta 15015401  T
Q  218 aaggaaacgtgatccattgttgataaaatatattgtagttcatcaaccctgttctcatgatcctccttcatcgtagtgttggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15015400 aaggaaacgtgatccattgttgataaaatatattgtagttcatcaaccctgttctcatgatcctccttcatcgtattgttggt 15015318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 15026156 - 15025881
Alignment:
Q  18 aattcttgcttgcctttttcgttcaatcaaagttggctaaat-----agtcttcaatcaattacaatgatcacagccagatgtcaactgatccgcatgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15026156 aattcttgcttgcctttttcgttcaatcaaagttggctaaattaaatagtcttcaatcaattacaatgatcacagccagatgtcaactgatccgcatgat 15026057  T
Q  113 atgaataacacaaaaatggaatcaaattgcagcaagggaaaatgacaaatccgttctaacagaatgtaaagcgaaggaaattagtgaaaatgctatggca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15026056 atgaataacacaaaaatggaatcaaattgcagcaagggaaaatgacaaatccgttctaacagaatgtaaagcgaaggaaattagtgaaaatgatatggca 15025957  T
Q  213 agctaaaggaaacgtgatccattgttgataaaatatattgtagttcatcaaccctgttctcatgatcctccttcatc 289  Q
    ||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15025956 agctagaggaaacgtgatccgttgttgat-aaatatattgttgttcatcaaccctgttcccatgatcccccttcatc 15025881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 10416641 - 10416447
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||||||||||||||||||||| | || ||| ||||||||||| |||||| | |    
T  10416641 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaaca 10416543  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgta-ttttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| ||||||| ||||||||| ||||| |||||| | || ||||| ||||| ||||||||||||||||||||    
T  10416542 attttcaaattgactttcacttaaaatgatatccactgaaatttccacagaatatcctctatatttttgaatactttccaagatatgaatcctgtc 10416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 808177 - 808370
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| || ||||||||||||||| | |    
T  808177 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||| ||||  |  |||| ||||||| ||||||| ||||||||| |||||||||||| |||| |||| ||| | ||||||||||||||||||||    
T  808276 atttttaaatcgaaattcatttaaaatgatatccactgaaatttcaacagagtatcctctgtactttgaatattttccaagatatgaatcctgtc 808370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 4698597 - 4698404
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||  |||||||||||||||||| | |    
T  4698597 tgtcacgacccaaaa-ttcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaaca 4698499  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||  ||| ||||||| |||||||| |||| |||||||| | ||||||| ||||| ||||||||||||||| ||||    
T  4698498 attttcaaattgactttcacttgtaatgatatccactgaaattttgacatagtatcctctatattttgaatactttccaagatatgaatcttgtc 4698404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 15021440 - 15021330
Alignment:
Q  179 taaagcgaaggaaattagtgaaaatgctatggcaagctaaaggaaacgtgatccattgttgataaaatatattgtagttcatcaaccctgttctcatgat 278  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||| |||| |||||| ||||||    
T  15021440 taaagcaaaggaaattagtgaaaatgctatggcaagctaaaggatacgtgatcccttgttgataaactatattgttgttcaccaactctgttcccatgat 15021341  T
Q  279 cctccttcatc 289  Q
    || ||||||||    
T  15021340 cccccttcatc 15021330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 466
Target Start/End: Complemental strand, 2588533 - 2588375
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| | || ||| ||| | ||||||| |||| | |    
T  2588533 tgtcacgacccaaaa-ttcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaaca 2588436  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtatttt 466  Q
    | ||||||      | | ||||||||| ||||||| |||||||||||||||| ||||| ||||||||    
T  2588435 attttcaa------tctgacttaaaatgatatccactgaaatttcgacagagcatcctctgtatttt 2588375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15021509 - 15021445
Alignment:
Q  18 aattcttgcttgcctttttcgttcaatcaaagttggctaaatagtcttcaatcaattacaatgat 82  Q
    |||||||||| ||||||||| |||||||||||||| |||||||| || |||||||||||||||||    
T  15021509 aattcttgctcgcctttttcattcaatcaaagttgactaaatagcctacaatcaattacaatgat 15021445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 45333356 - 45333312
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagccta 45333312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 44324810 - 44324744
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  44324810 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagccta 44324744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 35111078 - 35111011
Alignment:
Q  299 gtgtcacgacccaaaaattcac-attcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    |||||||||||||||||  ||| | |||||||||||| |||||||||||||| |||| || |||||||||    
T  35111078 gtgtcacgacccaaaaa--cactaatcgtgaccggcgtacgaactagaacattctagccctgcaagccta 35111011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 299 - 512
Target Start/End: Original strand, 28058008 - 28058221
Alignment:
Q  299 gtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 398  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28058008 gtgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 28058107  T
Q  399 aaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtccaat 498  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28058108 aaatttcaaatttactttcacttaaaatgatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatataaatcctgtccaat 28058207  T
Q  499 tcaaaataattcat 512  Q
    |||||| |||||||    
T  28058208 tcaaaacaattcat 28058221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 299 - 512
Target Start/End: Original strand, 28068433 - 28068646
Alignment:
Q  299 gtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 398  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28068433 gtgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 28068532  T
Q  399 aaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtccaat 498  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28068533 aaatttcaaatttactttcacttaaaatgatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatataaatcctgtccaat 28068632  T
Q  499 tcaaaataattcat 512  Q
    |||||| |||||||    
T  28068633 tcaaaacaattcat 28068646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 299 - 496
Target Start/End: Complemental strand, 28104515 - 28104318
Alignment:
Q  299 gtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 398  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  28104515 gtgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagat 28104416  T
Q  399 aaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtcca 496  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28104415 aaatttcaaattgactttcacttaaaatgatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaggtatgaatcctgtcca 28104318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 5705065 - 5705258
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||   ||||||||||||| |||||||  |||||||||||||||||||||| | || ||  |||||||||||||||||| | |    
T  5705065 tgtcacgacccaaaa-ttcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaaca 5705163  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||| | ||||||||||| ||| |||| || |||||||| |||| ||||| || | ||||||| ||||| ||||||||||||||||||||    
T  5705164 attttcaaactgactttcacttagaatgatatacactgaaattttgacaaagtattctctatattttgaatactttccaagatatgaatcctgtc 5705258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 300 - 481
Target Start/End: Complemental strand, 19435710 - 19435537
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||| |||| ||| | || ||| ||||| |||||||||||| | |    
T  19435710 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaaca 19435613  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaga 481  Q
    | ||||||      | | ||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| | |||||||    
T  19435612 attttcaa------tctgacttaaaatgatatccactgaaatttcgacagagcatcctctgtattttgaatattttccaaga 19435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 7688436 - 7688541
Alignment:
Q  312 aaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattt 411  Q
    ||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| | || ||  |||||||||||||||||| | || |||||||||     
T  7688436 aaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaattttcaaattg 7688535  T
Q  412 actttc 417  Q
    ||||||    
T  7688536 actttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 11201288 - 11201244
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||    
T  11201288 tcgtgatcggcgcacgaactagaacattctagcccggcaagccta 11201244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 34494055 - 34494121
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||| |||  ||  ||||||||||||    
T  34494055 tgtcacgacccaaaaacacacat-cgtgaccggcgcacgaactagaccattttatcccggcaagccta 34494121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 300 - 488
Target Start/End: Complemental strand, 27527946 - 27527758
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaat 488  Q
    | ||||||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||  ||||||||||||||||||||    
T  27527846 attttcaaattgactttcacttaaaatgatatccaatgaaatttcgacaaagtgtcctttgaatttttaatactatccaagatatgaat 27527758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 33063810 - 33063617
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||   || ||||||||| |||||||||| || |||||||||||||||||| | || ||| |||||||||||||||||| | |    
T  33063810 tgtcacgacccaaaa-ttcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 33063712  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| | ||||||| ||||| |||||||| |||||| ||||    
T  33063711 attttcaaattgactttcacttaaaatgatatccactgagatttcgacagagtatcctctatattttgaatactttccaagatgtgaatcttgtc 33063617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 30131025 - 30130844
Alignment:
Q  313 aaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattta 412  Q
    |||||||  ||||||| |||||||||||||||| | ||||||||||| ||||||| | || ||  |||||||||||||||||| | || ||||||||| |    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  413 ctttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    |||||||||| |||  |||||| |||||||||||||||||||||| | ||||||| ||||| ||||||||||||||| ||||    
T  30130925 ctttcacttataatgttatccactgaaatttcgacagagtatcctctatattttgaatactttccaagatatgaatcttgtc 30130844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 323 - 494
Target Start/End: Complemental strand, 33056312 - 33056138
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaac---agttgacaaactataatttagataaatttcaaatttactttcac 419  Q
    |||||||||||||||||||||||  | |||||||||| ||||||| | || ||   | |||||||||||||||||| | || ||| ||||| ||||||||    
T  33056312 tcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaacaatttttaaattgactttcac 33056213  T
Q  420 ttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    ||||||| ||||||| ||| |||||||||||||||||| | ||||||| ||||| ||||||||||||||| ||||    
T  33056212 ttaaaatgatatccattgagatttcgacagagtatcctctatattttgaatactttccaagatatgaatcttgtc 33056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 481
Target Start/End: Complemental strand, 28041408 - 28041236
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||| || | || ||| ||| | |||||||||||| | |    
T  28041408 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaaca 28041311  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaga 481  Q
    | |||||       ||| ||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| | |||||||    
T  28041310 attttca-------tttgacttaaaatgatatccactgaaatttcgacagagcatcctctgtattttgaatattttccaaga 28041236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 15969963 - 15970066
Alignment:
Q  312 aaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattt 411  Q
    |||||||||| |||||||||||||||||| ||||||||| ||| |||||||| ||||| || ||| |||||||||||||||||| | || |||||||||     
T  15969963 aaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaattg 15970062  T
Q  412 actt 415  Q
    ||||    
T  15970063 actt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 25477665 - 25477730
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  25477665 tgtcacgacccaaa--ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagccta 25477730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 466
Target Start/End: Complemental strand, 6952881 - 6952740
Alignment:
Q  326 tgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaatttactttcactt-aaa 424  Q
    ||||||| |||| |||||||||| ||||||  | ||||| || | || ||| ||| |||||||||||||| | || ||| ||||| |||||||||| |||    
T  6952881 tgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaatttttaaattaactttcacttcaaa 6952782  T
Q  425 ataatatccaatgaaatttcgacagagtatcctttgtatttt 466  Q
    |||||| ||| ||||||||||||||| |||||| | ||||||    
T  6952781 ataatagccactgaaatttcgacagaatatcctctatatttt 6952740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 22014702 - 22014636
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  22014702 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagccta 22014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 14011732 - 14011688
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||    
T  14011732 tcgtgatcggcgcacgaactagaacattctagcccggcaagccta 14011688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 299 - 494
Target Start/End: Complemental strand, 1412 - 1217
Alignment:
Q  299 gtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagat 398  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| ||    
T  1412 gtgtcacaacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaat 1313  T
Q  399 aaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    || ||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||| |||||    
T  1312 aattttcaaattgacttacacttaaaatgatatccaatgaaatttcgacagagtgtcctttgaatttttaatactatccaagatatgaattctgtc 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 14650969 - 14650774
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgta-ttttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||| | ||||  |||||||||||||||||||| |||||    
T  14650869 attttcaaattgactttcacttaaaatgatattcaatgaaatttcgacagagtgtcctttgaattttttaatactatccaagatatgaattctgtc 14650774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 14654969 - 14654774
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||    
T  14654969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14654870  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgta-ttttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||| | ||||  |||||||||||||||||||| |||||    
T  14654869 attttcaaattgactttcacttaaaatgatattcaatgaaatttcgacagagtgtcctttgaattttttaatactatccaagatatgaattctgtc 14654774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 14660760 - 14660565
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgta-ttttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||| | ||||  |||||||||||||||||||| |||||    
T  14660660 attttcaaattgactttcacttaaaatgatattcaatgaaatttcgacagagtgtcctttgaattttttaatactatccaagatatgaattctgtc 14660565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 16104899 - 16104706
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||||||||||||||||||||| | || ||| |||||||||||||||||| | |    
T  16104899 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| ||||||||||||||| ||||||| ||||| ||||||||| |||||| | ||||||| ||||| |||||||||||||| |||||    
T  16104800 attttcaaattgactttcacttaaaatgatatccactgaaaattcgacagaatatcctctatattttgaatactttccaagatatgaattctgtc 16104706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 323 - 492
Target Start/End: Original strand, 19656911 - 19657080
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaatttactttcactta 422  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||   |||||||||||||||||| | || |||||||||||||||||||||    
T  19656911 tcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaattttcaaatttactttcactta 19657010  T
Q  423 aaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctg 492  Q
     ||| |||||||  ||||||||||||| |||| || | ||||||| ||||| ||||||||||||||||||    
T  19657011 taatgatatccacagaaatttcgacagcgtatgctctatattttgaatactttccaagatatgaatcctg 19657080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 16101443 - 16101248
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||||||||||||||||||||| | || ||| |||||||||||||||||| | |    
T  16101443 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16101345  T
Q  400 aatttcaaatttactttcacttaaaataata-tccaatgaaatttcgacagagtatcctttgta-ttttggatactatccaagatatgaatcctgtc 494  Q
    | |||||| || ||||||||||||||| ||| |||| ||||||||||||||| |||||| | || ||||| ||||| |||||||||||||| |||||    
T  16101344 attttcaagttgactttcacttaaaatgatattccactgaaatttcgacagaatatcctctatatttttgaatactttccaagatatgaattctgtc 16101248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 300 - 493
Target Start/End: Original strand, 17478215 - 17478407
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||| | | |||||| |||||||||||||||| | | |    
T  17478215 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaaca 17478313  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgt 493  Q
      || |||||| ||||||||||||||| ||||| | |||||||| |||| |||||| | |||| |||| ||| | |||||||| | ||||||||    
T  17478314 ttttccaaattgactttcacttaaaatgatatctactgaaattttgacatagtatcatctgtaatttgaatattttccaagattttaatcctgt 17478407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 300 - 481
Target Start/End: Original strand, 29287704 - 29287877
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||| |||||||||||| | |    
T  29287704 tgtcacgacccaaaa-ttcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaaca 29287801  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaga 481  Q
    | ||||||      ||| ||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| | |||||||    
T  29287802 attttcaa------tttgacttaaaatgatatccactgaaatttcgacagagcatcctctgtattttgaatattttccaaga 29287877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 47050059 - 47050122
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagc 364  Q
    ||||||||||||||| ||||||  |||||| ||||||| |||||||||||||||||||| |||||    
T  47050059 tgtcacgacccaaaa-ttcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagc 47050122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 17652807 - 17652873
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  17652807 tgtcacgacccaaaa-ttcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagccta 17652873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 481
Target Start/End: Original strand, 47050159 - 47050222
Alignment:
Q  418 acttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaga 481  Q
    ||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| | |||||||    
T  47050159 acttaaaatgatatccactgaaatttcgacagagcatcctctgtattttgaatattttccaaga 47050222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 300 - 488
Target Start/End: Original strand, 27197780 - 27197968
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||| || |||    
T  27197780 tgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaata 27197879  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaat 488  Q
    | ||| ||||| ||||||||||||||| ||||||||| | |||||||| |||||||||||| |||||  ||||||||||||||||||||    
T  27197880 atttttaaattgactttcacttaaaatgatatccaataatatttcgaccgagtatcctttgaatttttaatactatccaagatatgaat 27197968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 5518975 - 5519168
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| | || ||| || ||||||||||||||| | |    
T  5518975 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacatcatagtccggcaagcctattgacgacacttaacaaactataatttaaaca 5519073  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||| ||||  |  |||||||||||| ||||||| ||||||||| |||||||||||| ||||||||| ||| | ||||| |||| |||||||||    
T  5519074 atttttaaatcgaaattcacttaaaatgatatccactgaaatttcaacagagtatcctctgtattttgaatattttccaatatataaatcctgtc 5519168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 42786185 - 42785992
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||| | || ||| || ||||||||||||||| | |    
T  42786185 tgtcacgacccaaaattt-ataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 42786087  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||| ||||  |  |||| ||||||| ||||||| ||||||||| |||||||||||| |||| |||| ||| | ||||||||||||||||||||    
T  42786086 atttttaaatcaaaattcatttaaaatgatatccactgaaatttcaacagagtatcctctgtactttgaatattttccaagatatgaatcctgtc 42785992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 302 - 466
Target Start/End: Complemental strand, 15599535 - 15599370
Alignment:
Q  302 tcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaa 401  Q
    |||||||||||||| ||| | ||||||| | ||||||||||||||||||||||| ||||||||||| | || ||| ||||||  | | ||||||||  |     
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  402 tttcaaatttactttcactt-aaaataatatccaatgaaatttcgacagagtatcctttgtatttt 466  Q
    || ||| || | |||||||| ||||||||||| |  ||||||| |||| ||||| || ||||||||    
T  15599435 ttccaatttgaatttcacttcaaaataatatctaccgaaattttgacaaagtattctctgtatttt 15599370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 28602614 - 28602807
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||| | |    
T  28602614 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||  |  |||||||||||| ||||||| ||||||||| |||||||||||| ||||||| | ||| | ||||||||||||||||||||    
T  28602713 attttcaaatcgaaattcacttaaaatgatatccactgaaatttcaacagagtatcctctgtatttagaatattttccaagatatgaatcctgtc 28602807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 300 - 491
Target Start/End: Original strand, 4706151 - 4706341
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||   | || ||| || ||||||||||||||| | |    
T  4706151 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaaca 4706249  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcct 491  Q
    | ||| ||||  |  |||| ||||||| ||||||| ||||||||| |||||||||||| |||| |||| ||| | |||||||||||||||||    
T  4706250 atttttaaatcgaaattcatttaaaatgatatccactgaaatttcaacagagtatcctctgtactttgaatattttccaagatatgaatcct 4706341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 298 - 494
Target Start/End: Complemental strand, 15925637 - 15925442
Alignment:
Q  298 ggtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttaga 397  Q
    ||||||||||||||||| || | || |||||||||||||| || |||| |||||||||||| |||||||| | |   || |||| || |||||||||| |    
T  15925637 ggtgtcacgacccaaaatttaatat-cgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaa 15925539  T
Q  398 taaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
     || |||||||||   | ||||||||||| ||||||| || ||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||    
T  15925538 caattttcaaattgtttctcacttaaaatgatatccactggaatttcgacagagtatcctctatattttgaatactttccaagatatgaatcctgtc 15925442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 18983119 - 18983075
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||||||||||||||| ||||  |||||||||||    
T  18983119 tcgtgaccggcgcacgaactagaacattctagctcggcaagccta 18983075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 312 - 494
Target Start/End: Original strand, 30873901 - 30874084
Alignment:
Q  312 aaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattt 411  Q
    |||||||| | ||||||||||||||| |||||||||||| |||||||||||||||| | || ||| |||||||||||||||||| | || ||| |||||     
T  30873901 aaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaatttttaaattg 30874000  T
Q  412 actttcac-ttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    || ||||| ||||||||||||||| ||||||||||||| | |||||| ||||||||  ||| | |||||| |||||||| ||||    
T  30874001 accttcactttaaaataatatccactgaaatttcgacacaatatcctctgtattttcaatattttccaaggtatgaatcatgtc 30874084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 323 - 451
Target Start/End: Original strand, 5358125 - 5358254
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattt-actttcactt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||||| | || |||||||||| |||||||       
T  5358125 tcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaacaattttcaaatttgactttcataa 5358224  T
Q  422 aaaataatatccaatgaaatttcgacagag 451  Q
    |||| ||||| || ||||||||||||||||    
T  5358225 aaaaaaatattcactgaaatttcgacagag 5358254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 312 - 481
Target Start/End: Original strand, 27560639 - 27560801
Alignment:
Q  312 aaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaatttcaaattt 411  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | || ||| ||| | |||||||||||| | || ||||||        
T  27560639 aaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaattttcaa---- 27560733  T
Q  412 actttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaaga 481  Q
      | | ||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| | |||||||    
T  27560734 --tatgacttaaaatgatatccactgaaatttcgacagagcatcctctgtattttgaatattttccaaga 27560801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 395
Target Start/End: Complemental strand, 51534328 - 51534234
Alignment:
Q  299 gtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataattta 395  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| | || ||| ||||| ||||||||||||    
T  51534328 gtgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 18693730 - 18693796
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  18693730 tgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagccta 18693796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 3958 - 4150
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||| |||||| ||| |||| ||| ||| || ||||||||||| | |    
T  3958 tgtcacgacccaaaa-ttcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||| ||||| | ||||||| ||||| ||||||| ||||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| ||||    
T  4057 atttttaaattgattttcactgaaaatgatatccactgaaatttcgacatagta-cctttgtcttttgaatattttccaagatatgaatcatgtc 4150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 5310 - 5504
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaac--tataatttaga 397  Q
    ||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||| |||||| ||| | || ||| |||||| ||  ||||||||| |    
T  5310 tgtcacgacccaaaa-ttcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  398 taaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
     || ||| ||||| | ||||||| ||||| ||||||| ||||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| ||||    
T  5409 caatttttaaattgattttcactgaaaatgatatccactgaaatttcgacatagta-cctttgtcttttgaatattttccaagatatgaatcatgtc 5504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 494
Target Start/End: Original strand, 115263 - 115456
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| |||||| || ||| ||||||||||||||||| |||||| || |||||| ||| | || ||| |||||| ||||||||||| | |    
T  115263 tgtcacgacccaaaa-ttcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||||||||| | ||||||||||||| ||| ||| ||||||||||||| |||| ||| ||||||||| ||| | ||||||||||||||| ||||    
T  115362 attttcaaattgattttcacttaaaatgatacccactgaaatttcgacatagtaccctctgtattttgaatattttccaagatatgaatcatgtc 115456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 28804254 - 28804061
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    ||||||||||||||| || | || |||||||||||||||||||||| ||||||||||||||||| ||| | |  ||| |||||||||||||||||| | |    
T  28804254 tgtcacgacccaaaatttaatat-cgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaaca 28804156  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
    | ||| |||||   ||||||||||||| ||||||| |||||||||||||  |||| || | ||||||| ||||| | ||||||||||||| ||||    
T  28804155 atttttaaattgtttttcacttaaaatgatatccactgaaatttcgacaaggtattctctatattttgaatacttttcaagatatgaatcatgtc 28804061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 494
Target Start/End: Complemental strand, 26525492 - 26525299
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 399  Q
    |||||||||| |||||||||   ||||||||||||||||||||||||| | |||| ||| |||| ||| | || ||| |||||||||||||||||  | |    
T  26525492 tgtcacgacc-aaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactataatttgaaaa 26525394  T
Q  400 aatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagatatgaatcctgtc 494  Q
      |||||| || |||| |||||||||| |||||   |||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||| ||||    
T  26525393 tttttcaatttgacttccacttaaaatgatatcttctgaaatttcgacagagtatcctctgtattttgaatattttcctagatatgaatcatgtc 26525299  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 18058048 - 18057979
Alignment:
Q  294 tgttggtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagc 364  Q
    |||| ||||||||||||||||||| ||| |||| |||| |||||||||||| ||||| |||| ||||||||    
T  18058048 tgtttgtgtcacgacccaaaaatt-acaatcgtaaccgacgcacgaactagtacatcttagttcggcaagc 18057979  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 36263730 - 36263774
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||    
T  36263730 tcgtgaccggcgcacgaactagaacattttagcccggcaagccta 36263774  T

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Target: scaffold0002 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 302 - 466
Target Start/End: Original strand, 406455 - 406618
Alignment:
Q  302 tcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaa 401  Q
    ||||||||||||| |||| | |||||| ||||||||||||||||||||||| ||| |  || |||| | || | | |||||||||||||||||| ||||     
T  406455 tcacgacccaaaa-ttcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataat 406553  T
Q  402 tttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtatttt 466  Q
    ||| ||||| ||||||||||||||| ||||||| ||||||||||||| || ||| | ||||||||    
T  406554 ttttaaattgactttcacttaaaatgatatccactgaaatttcgacaaagcatcatctgtatttt 406618  T

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Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 10398 - 10306
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatt 393  Q
    ||||||||||||||| || | || |||||||||||||||||||||| ||||||||||||||||||||| | |  ||| ||||||||||||||||    
T  10398 tgtcacgacccaaaatttaatat-cgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

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Target: scaffold0002; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 493
Target Start/End: Original strand, 412530 - 412645
Alignment:
Q  378 ttgacaaactataatttagataaatttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatcc 477  Q
    |||| ||||||||||||| |||| ||| ||||| |||||||||||||||  |||||| ||||||||||||| | |||||| ||||||||| ||| | | |    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcacttaaaatgttatccactgaaatttcgacaaaatatcctatgtattttgaatatttttc 412629  T
Q  478 aagatatgaatcctgt 493  Q
    ||||| | ||||||||    
T  412630 aagattttaatcctgt 412645  T

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Target: scaffold0002; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 466
Target Start/End: Original strand, 423827 - 423989
Alignment:
Q  302 tcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagataaa 401  Q
    ||||||||||||| |||||| | |||| ||| |||| ||||| ||||| ||||||||  ||  ||| | || | | ||||||||||||| |||| | ||     
T  423827 tcacgacccaaaa-ttcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaat 423924  T
Q  402 tttcaaatttactttcacttaaaataatatccaatgaaatttcgacagagtatcctttgtatttt 466  Q
    ||| ||||| | ||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||    
T  423925 ttttaaattgattttcacttaaaatgatatccactgaaatttcgacaaagtatcatttgtatttt 423989  T

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Target: scaffold0012 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 298 - 482
Target Start/End: Original strand, 233052 - 233237
Alignment:
Q  298 ggtgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttaga 397  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | |||||| |||||||| || |||| |||    
T  233052 ggtgtcacgacccaaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcaga 233150  T
Q  398 taaatttcaaatttactttcactt--aaaataatatccaatgaaatttcgacagagtatcctttgtattttggatactatccaagat 482  Q
      | || ||| || ||||||||||  |||| |||||| | |||||||||||   |||||| | |||||||| |||| | ||||||||    
T  233151 ctatttccaatttgactttcacttcaaaaacaatatctactgaaatttcgatgaagtatcatctgtattttcgataatttccaagat 233237  T

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Target: scaffold0406 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 367
Target Start/End: Complemental strand, 4227 - 4162
Alignment:
Q  300 tgtcacgacccaaaaattcacattcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  4227 tgtcacgacccaaa--ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagccta 4162  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 61256 - 61212
Alignment:
Q  323 tcgtgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagccta 61212  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 76608 - 76649
Alignment:
Q  326 tgaccggcgcacgaactagaacatcctagtccggcaagccta 367  Q
    |||||||||||| ||||| ||||||||||| |||||||||||    
T  76608 tgaccggcgcacaaactaaaacatcctagttcggcaagccta 76649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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