View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_4 (Length: 473)
Name: NF15504_low_4
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 2629786 - 2629333
Alignment:
| Q |
1 |
gaaactcatagacaagattgaaacaagaaagnnnnnnngaacaatggttcgaaaaggtgatattgtttgggtaagagaaatttacttccctcacaacaac |
100 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2629786 |
gaaactcataaacaagattgaaacaagaaagaaaaaaagaagaatggttcgaaaaggtgatattgtttgggtaagagaaattcagttccctcacaacaac |
2629687 |
T |
|
| Q |
101 |
aac---tacaattggtctccagctt-agttaaatcttccaacaacctcggcatctcactttccttcttcaacaaccccaaccccacacaacgcaccttct |
196 |
Q |
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||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2629686 |
aacaactacaattggtctccagctttagttacatcttccaaccacctcggcatctcactttccttcttcaacaaccccaacaccacacaacgcaccttct |
2629587 |
T |
|
| Q |
197 |
ttcttcaatccgaggttattcctttcgatgaattacccttttcaaacgatacatttcaatgcgaagcgttccgttctgcacttaggttattcggtctcag |
296 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2629586 |
ttcttcaatccgaagttattcctttcgatgaattacccttttcaaacgatacatttcaatgcgaagccttccgttctgcacttaggttattcggtctcag |
2629487 |
T |
|
| Q |
297 |
aatcgtttcaagtttgcggtgtcgttgtataacggctcataaccaagatgtagatgagagggttttacacgggtcgggttatcagtttgacccggttgga |
396 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2629486 |
aatcgtttcaagtttgcggtgccgttgtataacgggtcataacca------agaggagagggttttacacgggtcgggttatcagtttgacccggttgga |
2629393 |
T |
|
| Q |
397 |
gttttggcttttgttttagaagctgctgttttgccttgggttgaggattcgcgcgctgtt |
456 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||| |
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|
| T |
2629392 |
gttttggcttttgttttagatgctgctgttttgccttgggttgaggcttcgtgtgctgtt |
2629333 |
T |
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