View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_8 (Length: 345)
Name: NF15504_low_8
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 51417687 - 51417978
Alignment:
| Q |
14 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
113 |
Q |
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| T |
51417687 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
51417786 |
T |
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| Q |
114 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
213 |
Q |
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| T |
51417787 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
51417886 |
T |
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| Q |
214 |
gccaaagaaaaattaattaattaaaaggagttccaataacatagagagaaaggaaaaagaaggacagtcacaataaaactgtcatgattata |
305 |
Q |
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| T |
51417887 |
gccaaagaaaaattaattaattaaaaggagttccaataacatagaaagaatggaaaaagaaggacgatcacaataaaagtgtcatgattata |
51417978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 51412871 - 51412940
Alignment:
| Q |
236 |
aaaaggagttccaataacatagagagaaaggaaaaagaaggacagtcacaataaaactgtcatgattata |
305 |
Q |
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| T |
51412871 |
aaaagaagttccaataacaaggaaagtaaggaaaaagaaagacaagcacaatgaaactgtcatgattata |
51412940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 29323346 - 29323615
Alignment:
| Q |
14 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgatatcaatttcgatcgaatcattttactaacttttaattgccgataagcttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||| |
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| T |
29323346 |
aatatgtgggtcagagataacaaagtctccacccctttttggtgtgtgaagtcaatttcaatcgaatcattttactaacttttaattgctgataagtttc |
29323445 |
T |
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| Q |
114 |
tttataccagtttgaactctttagcaccaagacagaacttgttcaaagacacatttaattaaattgtctcaactaacgaaaattaacaaatttaaagcat |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
29323446 |
tttataccactttgaactctttagcaccaagacagaacttgttcaaggacacatttaattaaattg--tcaactaacgaaaattaac------aaagcat |
29323537 |
T |
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| Q |
214 |
gccaaagaaaaattaattaattaaaaggagttccaataacatagagagaaaggaaaaagaaggacagtcacaataaaa |
291 |
Q |
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| T |
29323538 |
gccaaagaaaaataaattaattaaaaggagttccaataacatagaaagaaaggaaaaagaaggacagtcacaataaaa |
29323615 |
T |
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