View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15504_low_9 (Length: 341)
Name: NF15504_low_9
Description: NF15504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15504_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 583332 - 583011
Alignment:
| Q |
1 |
aaatgtgacaattatttattattactctctaagctcggtgaagttaagaaggccattgtgatcatagtctgcaacgtcaaatttctccatccaccaccct |
100 |
Q |
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| T |
583332 |
aaatgtgacaattatttattattactctctaagctcggtgaagttaagaaggccattgtgatcatagtctgcaacgtcaaatttctccatcaaccaccct |
583233 |
T |
|
| Q |
101 |
gcttcgccatgtgccatannnnnnnnctctgttttagaagtcagttatctattgtcaaatatagattaaaatacaattattgactaaaagtttaagttat |
200 |
Q |
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| T |
583232 |
gcttcgccatgtgccatattttttttctctgttttagaagtcagttatctattgtcaaatatagattaaaatacaattattgactaaaaatttaagttat |
583133 |
T |
|
| Q |
201 |
tatgtaaaatttcatacaaaaatttgaacatttgacttacaccttgttagaacaataactagtaacataaaattaaagaaaatgaaaaacgctcgatata |
300 |
Q |
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| T |
583132 |
tatgtaaaatttcatacaaaaatttgaacatttgacttacaccttgttagaacaataaccagtaacataaaattaaagaaagtgaaaaacgctcgatata |
583033 |
T |
|
| Q |
301 |
atttacacattttatcaatgat |
322 |
Q |
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|||||| |||||||||||||| |
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| T |
583032 |
gtttacatattttatcaatgat |
583011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 52579774 - 52579730
Alignment:
| Q |
244 |
ttgttagaacaataactagtaacataaaattaaagaaaatgaaaa |
288 |
Q |
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| T |
52579774 |
ttgttagaacagcaactagtaacagaagattaaagaaaatgaaaa |
52579730 |
T |
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