View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15505_high_1 (Length: 596)

Name: NF15505_high_1
Description: NF15505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15505_high_1
NF15505_high_1
[»] chr1 (6 HSPs)
chr1 (394-538)||(46566567-46566711)
chr1 (396-538)||(12606569-12606711)
chr1 (396-504)||(49195425-49195533)
chr1 (396-518)||(40908316-40908438)
chr1 (82-185)||(27003536-27003639)
chr1 (82-183)||(9763186-9763287)
[»] chr7 (2 HSPs)
chr7 (395-538)||(10646041-10646184)
chr7 (393-446)||(4658702-4658755)
[»] chr5 (2 HSPs)
chr5 (395-538)||(43469538-43469681)
chr5 (395-539)||(12870154-12870298)
[»] chr4 (3 HSPs)
chr4 (395-538)||(23538151-23538294)
chr4 (396-504)||(31525469-31525577)
chr4 (532-580)||(15707230-15707278)
[»] chr3 (3 HSPs)
chr3 (396-504)||(33365925-33366033)
chr3 (82-184)||(43344590-43344692)
chr3 (82-184)||(50315227-50315329)
[»] chr6 (1 HSPs)
chr6 (396-539)||(27765318-27765455)
[»] chr8 (3 HSPs)
chr8 (82-184)||(4527395-4527497)
chr8 (532-580)||(44495377-44495424)
chr8 (202-238)||(8235929-8235965)
[»] scaffold0238 (2 HSPs)
scaffold0238 (395-485)||(5099-5189)
scaffold0238 (484-538)||(5329-5383)
[»] chr2 (4 HSPs)
chr2 (395-464)||(10983161-10983229)
chr2 (395-518)||(3081202-3081325)
chr2 (532-580)||(3377287-3377335)
chr2 (233-261)||(31562509-31562537)
[»] scaffold0642 (1 HSPs)
scaffold0642 (532-580)||(3974-4022)
[»] scaffold0345 (1 HSPs)
scaffold0345 (532-580)||(13886-13934)
[»] scaffold0105 (1 HSPs)
scaffold0105 (532-580)||(25047-25095)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 394 - 538
Target Start/End: Original strand, 46566567 - 46566711
Alignment:
Q  394 taatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatct 493  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| | | |||| ||||||||||||||    
T  46566567 taatcctttattataaaagccagatttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatttgtaattaatgctaatctcatct 46566666  T
Q  494 gccaaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    |||||||||| | | ||||||||||||||| ||||||||||||||    
T  46566667 gccaaccacatcctaaatctcagcctttgatctgatgacctttca 46566711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 396 - 538
Target Start/End: Complemental strand, 12606711 - 12606569
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || |||| |||||||| |||||||    
T  12606711 atcctttactataaaagccagacttgatgtgctggcagtgttgccctaatcactccttattttccctccctaatccataattaatgctaatcccatctgc 12606612  T
Q  496 caaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    |||||||||| | ||||||||||||||| ||||||||||||||    
T  12606611 caaccacaccctaaatctcagcctttgatctgatgacctttca 12606569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 396 - 504
Target Start/End: Complemental strand, 49195533 - 49195425
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||| | |||| || |||||||||||||    
T  49195533 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcatctgc 49195434  T
Q  496 caaccacac 504  Q
    |||||||||    
T  49195433 caaccacac 49195425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 518
Target Start/End: Original strand, 40908316 - 40908438
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||   || ||||||||||| |||  |    ||| || |||||||||||||    
T  40908316 atcctttactataaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaacatgaatttaatgttaatctcatctgc 40908415  T
Q  496 caaccacacctttaatctcagcc 518  Q
    ||||||||| || ||||||||||    
T  40908416 caaccacacgttaaatctcagcc 40908438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 27003536 - 27003639
Alignment:
Q  82 atattaaagacctatcatactcaaaaatggcaattgggtgagacacaaagagagagtttgtgcaattcgtggggtttgttctcgcaccatatagcatcac 181  Q
    |||||||| |||||| | | | ||||| || ||||||||| | ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||    
T  27003536 atattaaaaacctataaaaattaaaaaaggaaattgggtggggcacaaagagagtgttcgtgcaattcatggggtttgttctcgcaccatatagcatcac 27003635  T
Q  182 tgtt 185  Q
    ||||    
T  27003636 tgtt 27003639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 9763287 - 9763186
Alignment:
Q  82 atattaaagacctatcatactcaaaaatggcaattgggtgagacacaaagagagagtttgtgcaattcgtggggtttgttctcgcaccatatagcatcac 181  Q
    |||||||| |||||| | | | ||||| || | ||||||| | ||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||||    
T  9763287 atattaaaaacctataaaaattaaaaaaggaagttgggtggggcacaaagagattgttcgtgcaattcgtggggattgttctcgcaccatatagcatcac 9763188  T
Q  182 tg 183  Q
    ||    
T  9763187 tg 9763186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 10646184 - 10646041
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctg 494  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  | |||| |||||||||||||||    
T  10646184 aatcctttattctaaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgctaatctcatctg 10646085  T
Q  495 ccaaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||    
T  10646084 ccaaccacaccctaaatctcagcctttgatctgatgaccattca 10646041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 4658755 - 4658702
Alignment:
Q  393 ttaatcctttattataaaagccagacttgatgagctggcagtgttgccctaatc 446  Q
    |||||| |||||||||||||| |||||||||||||| |||   |||||||||||    
T  4658755 ttaatcttttattataaaagctagacttgatgagctagcatgtttgccctaatc 4658702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 43469681 - 43469538
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctg 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  | |||| || |||| |||||||    
T  43469681 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcccaaatccgtaattaatgttaatttcatctg 43469582  T
Q  495 ccaaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    ||||||||||| | ||||||||||||||| | || |||||||||    
T  43469581 ccaaccacaccctaaatctcagcctttgatcggaagacctttca 43469538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 395 - 539
Target Start/End: Original strand, 12870154 - 12870298
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctg 494  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||  | |||| ||||||  ||| |      
T  12870154 aatcctttactataaaagccagacttgatgagctggcagtgttgccctaatcacttctgtttttccctccctaatccgtaattaatgctaacttcaacaa 12870253  T
Q  495 ccaaccacacctttaatctcagcctttgacctgatgacctttcaa 539  Q
    ||||||||||| | ||||||||||||||| |||||||| ||||||    
T  12870254 ccaaccacaccctaaatctcagcctttgatctgatgacttttcaa 12870298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 395 - 538
Target Start/End: Complemental strand, 23538294 - 23538151
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctg 494  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||  ||||||| ||||| |||||| | |||| |||||||||||||||    
T  23538294 aatcctttattattaaagtcagacttgatgagctagcagtgttgccctaatcactcattatttttcctccctaatctgtaattaatgctaatctcatctg 23538195  T
Q  495 ccaaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    ||||||||||| | |||||| |||||||| ||||||||||||||    
T  23538194 ccaaccacaccctaaatctcggcctttgatctgatgacctttca 23538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 396 - 504
Target Start/End: Complemental strand, 31525577 - 31525469
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||| | |||| || |||||||| ||||    
T  31525577 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctgtaattaatgttaatctcaactgc 31525478  T
Q  496 caaccacac 504  Q
    |||||||||    
T  31525477 caaccacac 31525469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 15707230 - 15707278
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15707230 cctttcaattacctctttgaactacaaacaattttcaaactaaccaatc 15707278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 396 - 504
Target Start/End: Original strand, 33365925 - 33366033
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||| |||| || |||||||| ||||    
T  33365925 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcactcctgtttttccctccctaatctataattaatgttaatctcaactgc 33366024  T
Q  496 caaccacac 504  Q
    |||||||||    
T  33366025 caaccacac 33366033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 43344590 - 43344692
Alignment:
Q  82 atattaaagacctatcatactcaaaaatggcaattgggtgagacacaaagagagagtttgtgcaattcgtggggtttgttctcgcaccatatagcatcac 181  Q
    |||||||| |||||| | | | ||||| || ||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  43344590 atattaaaaacctataaaaattaaaaaaggaaattgggtggggcacaaagagagtgttcgtgcaattcgtggggtttgttctcgcaccatatagcatcac 43344689  T
Q  182 tgt 184  Q
    |||    
T  43344690 tgt 43344692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 50315329 - 50315227
Alignment:
Q  82 atattaaagacctatcatactcaaaaatggcaattgggtgagacacaaagagagagtttgtgcaattcgtggggtttgttctcgcaccatatagcatcac 181  Q
    |||||||| |||||| | | | ||||| || ||||||||| | ||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||    
T  50315329 atattaaaaacctataaaaattaaaaaaggaaattgggtggggcacaaagagagtgttcgtgcaattcatggggtttgttctcgccccatatagcatcac 50315230  T
Q  182 tgt 184  Q
    |||    
T  50315229 tgt 50315227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 396 - 539
Target Start/End: Original strand, 27765318 - 27765455
Alignment:
Q  396 atcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaatctcatctgc 495  Q
    |||||||||||| ||||| ||||||||||||||||      |||||||||||||| |  |||||||||| ||||| || |||| ||||||||||| ||||    
T  27765318 atcctttattattaaagctagacttgatgagctgg------tgccctaatcacttttgtttttccctccctaatccataattaatgctaatctcaactgc 27765411  T
Q  496 caaccacacctttaatctcagcctttgacctgatgacctttcaa 539  Q
    |||||||||| | ||||| || |||||| |||||||||||||||    
T  27765412 caaccacaccataaatcttagtctttgatctgatgacctttcaa 27765455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 4527395 - 4527497
Alignment:
Q  82 atattaaagacctatcatactcaaaaatggcaattgggtgagacacaaagagagagtttgtgcaattcgtggggtttgttctcgcaccatatagcatcac 181  Q
    |||||||| |||||| | | | ||||| || ||||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  4527395 atattaaaaacctataaaaattaaaaaaggaaattgggtggggcacaaagagagtgttcgtgcaattcgtggggtttgttctcgcaccatatagcatcac 4527494  T
Q  182 tgt 184  Q
    |||    
T  4527495 tgt 4527497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 44495377 - 44495424
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  44495377 cctttcaattacctcttt-aactacaaacaattttcaaactaaccaatc 44495424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 8235965 - 8235929
Alignment:
Q  202 tccccttccttccaaactcctaaacaaagtcttagta 238  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  8235965 tccccttctttccaaactcctaaacaaaatcttagta 8235929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 5099 - 5189
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatcattagtgctaa 485  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| ||||| ||||| || |||| ||||||    
T  5099 aatcctttactataaaagccagatttgatgtgctggcagtgttgtcctaatcactccttatttttcctccttaatccataattaatgctaa 5189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 5329 - 5383
Alignment:
Q  484 aatctcatctgccaaccacacctttaatctcagcctttgacctgatgacctttca 538  Q
    |||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||    
T  5329 aatcccatctgccaaccacaccctaaatctcagcctttgatctgatgacctttca 5383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 10983229 - 10983161
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctcc 464  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||    
T  10983229 aatcctttattataaaagccagacttgatgagctggcagt-ttgccctaatcaatcctgattttccctcc 10983161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 395 - 518
Target Start/End: Original strand, 3081202 - 3081325
Alignment:
Q  395 aatcctttattataaaagccagacttgatgagctggcagtgttgccctaatcacttcttattttccctccataatctatca-ttagtgctaatctcatct 493  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||   || ||||||||||| ||| |   || ||| || |||||||||||    
T  3081202 aatcctttactattaaagccagacttgatgagctggcagtgttgccctaatcatccctcattttccctccctaa-cacgcatttaatgttaatctcatct 3081300  T
Q  494 gccaaccacacctttaatctcagcc 518  Q
    ||||| ||||| || ||||||||||    
T  3081301 gccaatcacacattaaatctcagcc 3081325  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 3377287 - 3377335
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3377287 cctttcaattacctctttgaactacaaacaattttcaaactaaccaatc 3377335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 31562509 - 31562537
Alignment:
Q  233 ttagtaaatggaagaaggtttatgaggtt 261  Q
    |||||||||||||||||||||||||||||    
T  31562509 ttagtaaatggaagaaggtttatgaggtt 31562537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 3974 - 4022
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  3974 cctttcgattacctctttgaactacaaacaattttcaaactaaccaatc 4022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 532 - 580
Target Start/End: Original strand, 13886 - 13934
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  13886 cctttcgattacctctttgaactacaaacaattttcaaactaaccaatc 13934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 532 - 580
Target Start/End: Complemental strand, 25095 - 25047
Alignment:
Q  532 cctttcaattaccgctttgaactacaaacaattttcaaactaaccaatc 580  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  25095 cctttcgattacctctttgaactacaaacaattttcaaactaaccaatc 25047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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