View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15505_low_2 (Length: 441)
Name: NF15505_low_2
Description: NF15505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15505_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 7752495 - 7752681
Alignment:
| Q |
1 |
aggagaatccttctctgtaactccctagtatcaatataatgaactagttgacatagtaatggttctgatattgaatcaactttgaataattacctaacta |
100 |
Q |
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| T |
7752495 |
aggagaatccttctctgtaactccctagtatcaatataatgaactagttaacatagtaatggttctgatattgaatcaactttgaataattacctaacta |
7752594 |
T |
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| Q |
101 |
acctcaagatagaatgctattgagacaagaaaaaggcttcctgtcattattgatgaggatatctgcaaaagtgattacacattatag |
187 |
Q |
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| T |
7752595 |
acctcaaaatagaatgctattgagacaagaaaaaggcttcctgtcattattgatgaggatatctgcaaaagtgattacacattatag |
7752681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 254 - 425
Target Start/End: Original strand, 7752742 - 7752916
Alignment:
| Q |
254 |
ttaactattagaagtagccttcttccacttttgtccaccaaccaagtagtgattccagtaactatgacctagaagaaaaagctgattatgataactgaat |
353 |
Q |
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| T |
7752742 |
ttaactattagaagtagccttcttccacttttgtccaccaaccaagtagtgattccagtaactatgacctagaagaaaaagctgattatgataactgaat |
7752841 |
T |
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| Q |
354 |
tcactattttg---ttatgacatgaagaaacaataggatatgcaaaatccaacctgaataaccccaagtccaact |
425 |
Q |
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| T |
7752842 |
tcactattttgttattattacatgaagaaacaataggatatgcaaaatccaacctgaataatcccaagtccaact |
7752916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 7823401 - 7823526
Alignment:
| Q |
31 |
tcaatataatgaactagttgacatagtaatggttctgatattgaatcaactttgaataattacctaactaacctcaagatagaatgctattgagacaaga |
130 |
Q |
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| T |
7823401 |
tcaatacaatgaactagttaacatagtaaaggttctaatgtagaatcaacctcgaatgattagctaaataacgtcaagatagaatgctattgaaacaaga |
7823500 |
T |
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| Q |
131 |
aaaaggcttcctgtcattattgatga |
156 |
Q |
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|||| ||||||| ||||||| ||||| |
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| T |
7823501 |
aaaaagcttcctatcattatagatga |
7823526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 32932145 - 32932063
Alignment:
| Q |
278 |
ccacttttgtccaccaaccaagtagtgattccagtaactatgacctagaagaaaaagctgattatgataactgaattcactat |
360 |
Q |
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| T |
32932145 |
ccacttttgtccaccaaccaagtagctactccagtagctatgacctggaaaagaatactgattatgagaattgaattcactat |
32932063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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