View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15505_low_3 (Length: 328)

Name: NF15505_low_3
Description: NF15505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15505_low_3
NF15505_low_3
[»] chr2 (1 HSPs)
chr2 (11-310)||(2410780-2411067)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 2410780 - 2411067
Alignment:
Q  11 catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410780 catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc 2410879  T
Q  111 aattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaa 210  Q
    |||||||||||||||||||||||||||||||||||||||        || || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2410880 aattataggcaagaatcgattttctgacattattttgtt--------aagagcgttacagtaacacagtgttgtttttgttttggtg-ttgtaacaacaa 2410970  T
Q  211 gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctggtagtaagagaataaaagaaacggtattcaagggttc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  2410971 gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctg---gtaagagaataaaagaaacggtattcaagggttc 2411067  T

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