View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15505_low_5 (Length: 299)

Name: NF15505_low_5
Description: NF15505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15505_low_5
NF15505_low_5
[»] chr7 (24 HSPs)
chr7 (1-285)||(10280006-10280290)
chr7 (1-285)||(16436967-16437255)
chr7 (1-253)||(14926875-14927128)
chr7 (1-253)||(15350341-15350594)
chr7 (40-284)||(29545855-29546102)
chr7 (1-276)||(20924786-20925063)
chr7 (1-171)||(15438406-15438577)
chr7 (1-254)||(26132606-26132858)
chr7 (1-285)||(15506459-15506745)
chr7 (1-177)||(14165471-14165645)
chr7 (1-285)||(20991736-20992022)
chr7 (1-177)||(16207560-16207735)
chr7 (37-285)||(10661056-10661307)
chr7 (33-285)||(4458934-4459187)
chr7 (50-189)||(42636510-42636649)
chr7 (88-222)||(42783019-42783153)
chr7 (9-119)||(645495-645606)
chr7 (1-119)||(11999243-11999361)
chr7 (1-177)||(11588769-11588943)
chr7 (1-119)||(11521093-11521210)
chr7 (195-248)||(10038607-10038660)
chr7 (1-54)||(24902531-24902584)
chr7 (1-53)||(7586210-7586262)
chr7 (1-53)||(10038409-10038461)
[»] chr1 (14 HSPs)
chr1 (1-285)||(23477615-23477900)
chr1 (1-251)||(17851055-17851305)
chr1 (32-253)||(15803821-15804042)
chr1 (71-285)||(11667610-11667826)
chr1 (106-254)||(24986226-24986372)
chr1 (33-189)||(12753352-12753509)
chr1 (1-122)||(1625935-1626054)
chr1 (9-177)||(4246341-4246508)
chr1 (1-148)||(25349882-25350038)
chr1 (16-167)||(20840958-20841108)
chr1 (6-101)||(26972085-26972180)
chr1 (1-101)||(13165773-13165873)
chr1 (1-60)||(24986403-24986462)
chr1 (124-251)||(1625799-1625922)
[»] chr5 (22 HSPs)
chr5 (1-254)||(26328894-26329146)
chr5 (11-285)||(23624070-23624345)
chr5 (1-285)||(18221303-18221589)
chr5 (1-283)||(30605371-30605655)
chr5 (2-276)||(13338792-13339065)
chr5 (33-213)||(22082401-22082580)
chr5 (1-143)||(38405698-38405841)
chr5 (1-250)||(20714420-20714669)
chr5 (125-254)||(26037038-26037168)
chr5 (33-173)||(23757968-23758107)
chr5 (33-173)||(23823424-23823563)
chr5 (1-65)||(26037195-26037259)
chr5 (33-158)||(23420268-23420395)
chr5 (1-177)||(22404442-22404615)
chr5 (128-248)||(22184409-22184528)
chr5 (1-119)||(9422195-9422313)
chr5 (1-119)||(24190222-24190341)
chr5 (1-119)||(25105125-25105242)
chr5 (1-119)||(25164218-25164335)
chr5 (129-253)||(9522754-9522873)
chr5 (1-101)||(22251721-22251819)
chr5 (194-253)||(13941878-13941935)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-285)||(26597-26885)
[»] chr3 (21 HSPs)
chr3 (16-285)||(28051329-28051603)
chr3 (44-283)||(295655-295889)
chr3 (1-254)||(286576-286829)
chr3 (6-177)||(13515280-13515450)
chr3 (9-251)||(21253684-21253925)
chr3 (33-285)||(17042464-17042719)
chr3 (1-158)||(19634204-19634360)
chr3 (37-277)||(6579263-6579506)
chr3 (1-177)||(18063887-18064064)
chr3 (1-177)||(18034576-18034753)
chr3 (1-101)||(44452863-44452962)
chr3 (110-251)||(21718720-21718858)
chr3 (1-119)||(24195884-24196003)
chr3 (33-119)||(15635583-15635670)
chr3 (33-119)||(18548009-18548096)
chr3 (1-101)||(13791058-13791156)
chr3 (33-119)||(17702767-17702854)
chr3 (1-177)||(18483053-18483226)
chr3 (226-285)||(20748067-20748129)
chr3 (194-253)||(15674975-15675033)
chr3 (226-283)||(18477124-18477183)
[»] chr6 (30 HSPs)
chr6 (1-188)||(29253361-29253548)
chr6 (33-285)||(17864137-17864391)
chr6 (1-251)||(23882377-23882627)
chr6 (1-285)||(8465351-8465637)
chr6 (33-177)||(20465606-20465751)
chr6 (1-251)||(17869595-17869844)
chr6 (1-251)||(17879347-17879596)
chr6 (41-177)||(12039428-12039565)
chr6 (6-119)||(23879247-23879359)
chr6 (184-283)||(29254778-29254880)
chr6 (83-260)||(11960694-11960870)
chr6 (1-118)||(14259278-14259396)
chr6 (10-189)||(24541944-24542124)
chr6 (88-254)||(21323044-21323210)
chr6 (32-173)||(21723117-21723257)
chr6 (9-177)||(17234899-17235066)
chr6 (1-119)||(19077504-19077623)
chr6 (1-119)||(25969702-25969820)
chr6 (1-119)||(25974142-25974260)
chr6 (6-177)||(9281393-9281561)
chr6 (1-119)||(17527565-17527684)
chr6 (6-177)||(19100204-19100374)
chr6 (1-64)||(15930527-15930590)
chr6 (33-119)||(25965055-25965141)
chr6 (1-85)||(33666188-33666271)
chr6 (130-251)||(28623754-28623875)
chr6 (32-85)||(13195720-13195773)
chr6 (1-101)||(19171795-19171896)
chr6 (1-85)||(19894349-19894432)
chr6 (35-171)||(20989477-20989612)
[»] chr8 (12 HSPs)
chr8 (1-251)||(24092187-24092437)
chr8 (11-277)||(33977259-33977527)
chr8 (11-285)||(33961932-33962208)
chr8 (1-176)||(27925131-27925307)
chr8 (1-176)||(45136418-45136591)
chr8 (1-119)||(22485493-22485612)
chr8 (1-148)||(25240694-25240840)
chr8 (71-173)||(13660122-13660224)
chr8 (71-173)||(13718765-13718867)
chr8 (33-177)||(23541118-23541263)
chr8 (104-189)||(9996790-9996875)
chr8 (11-53)||(26536714-26536756)
[»] chr2 (7 HSPs)
chr2 (1-251)||(21530611-21530861)
chr2 (1-268)||(19444812-19445080)
chr2 (33-285)||(19466236-19466489)
chr2 (1-148)||(15328653-15328805)
chr2 (1-119)||(24789840-24789958)
chr2 (1-119)||(12910853-12910971)
chr2 (33-119)||(23758985-23759070)
[»] chr4 (13 HSPs)
chr4 (16-156)||(15700030-15700169)
chr4 (5-276)||(19183367-19183639)
chr4 (2-250)||(19659667-19659917)
chr4 (1-285)||(15162164-15162454)
chr4 (1-251)||(15622666-15622916)
chr4 (1-179)||(10724562-10724741)
chr4 (1-179)||(10938331-10938510)
chr4 (37-189)||(9069236-9069389)
chr4 (1-177)||(10191192-10191365)
chr4 (33-148)||(33746249-33746366)
chr4 (1-119)||(28019664-28019781)
chr4 (16-177)||(16384196-16384354)
chr4 (33-119)||(18601372-18601457)
[»] scaffold0226 (3 HSPs)
scaffold0226 (1-285)||(7218-7506)
scaffold0226 (33-251)||(17837-18056)
scaffold0226 (33-251)||(27231-27450)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-177)||(6211-6387)
[»] scaffold0213 (1 HSPs)
scaffold0213 (1-179)||(8260-8439)
[»] scaffold0185 (1 HSPs)
scaffold0185 (1-119)||(2048-2166)
[»] scaffold0190 (1 HSPs)
scaffold0190 (33-169)||(16332-16467)
[»] scaffold1001 (1 HSPs)
scaffold1001 (50-148)||(294-393)
[»] scaffold0088 (1 HSPs)
scaffold0088 (6-119)||(36952-37065)
[»] scaffold0359 (1 HSPs)
scaffold0359 (1-101)||(2299-2398)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-101)||(25358-25458)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-119)||(12191-12309)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-101)||(109940-110039)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-53)||(356976-357028)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 10280290 - 10280006
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280290 tataaaaggaagacatcaagacctaatgtactattcaagccgttattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 10280191  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280190 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 10280091  T
Q  201 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatctgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280090 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatctgtgtttgtgttttagtctgatagatcacagg 10280006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 16437255 - 16436967
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagttt-agcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||||||||||||||||||||  | |||||||||| |||||||||||||||| |||||||| |  ||| |||||||||||||||||||||||||    
T  16437255 tataaaaggaagacatcaagacctaattgattattcaagccatcattctaaaaagttttagcttttagggttttaagtcttcatgtgttctattcttgta 16437156  T
Q  100 tcatgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| | |||| |||| ||||||| |    
T  16437155 tcatgttgatgcaagtttagtaccttttattgcgagcctttcttgtatcgtatgtgatacatgtttaggactgtgtgtagagttggaaactcttgtgttc 16437056  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttg-tgtt-ttagtctgatagatcacagg 285  Q
    |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||    
T  16437055 tacgccaaagcttttaagcaaggttgtagtt-tttgtttgaaggtaacttcatctttgtgtttgttgttgttagtctgatagatcacagg 16436967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 14927128 - 14926875
Alignment:
Q  1 tataaaaggaagacatcaagacctaatg-tactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||||||| ||||||||||||  || |||||| |   ||||||| |||||||||| ||||| |  |||||||| |  |||||||||||||||||    
T  14927128 tataaaaggaagacttcaagacctaattatattattcatgttttcattctgaaaagtttagtttttatggttttgagtcattgtgtgttctattcttgta 14927029  T
Q  100 tcatgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || |||||||||||||||||| |  |||||||||||||||| ||||| ||  || ||||| ||||| |||||||||||||| ||||||||| ||| ||||    
T  14927028 tcgtgttgatgcaagtttagttctgttttattgtgagccttccttgtttcaatt-tgatacatgttaaggactgtgtgttgagttgtaaactcttctgtg 14926930  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc 253  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  14926929 ctacgccaaagcttttaagaaaggttgtagttgtttgtttgaaggtaacttcatc 14926875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 15350594 - 15350341
Alignment:
Q  1 tataaaaggaagacatcaagacctaatg-tactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||||||| ||||||||||||  || |||||| |   ||||||| |||||||||| ||||| |  |||||||| |  |||||||||||||||||    
T  15350594 tataaaaggaagacttcaagacctaattatattattcatgttttcattctgaaaagtttagtttttatggttttgagtcattgtgtgttctattcttgta 15350495  T
Q  100 tcatgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || |||||||||||||||||| |  |||||||||||||||| ||||| ||  || ||||| ||||| |||||||||||||| ||||||||| ||| ||||    
T  15350494 tcgtgttgatgcaagtttagttctgttttattgtgagccttccttgtttcaatt-tgatacatgttaaggactgtgtgttgagttgtaaactcttctgtg 15350396  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc 253  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  15350395 ctacgccaaagcttttaagaaaggttgtagttgtttgtttgaaggtaacttcatc 15350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 284
Target Start/End: Original strand, 29545855 - 29546102
Alignment:
Q  40 ccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatc-atgttgatgcaagtttagtaccttttattgtgagcc 137  Q
    ||||||||||||||||||||| ||||  |||||| |||||| |||||| |||| ||||||||  ||  |||||||||||||| |||||| ||||||||||    
T  29545855 ccgtcattctaaaaagtttagatttttagagttttgagtctacatgtgctctactcttgtattgattgtgatgcaagtttagaaccttt-attgtgagcc 29545953  T
Q  138 tttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtt 237  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||  | || ||||| | |||| || ||| |||  |  |||||  ||||||| ||||    
T  29545954 tttcttgtatcgtttgtgatacatgtttaggactgtgtgttgagtttgatactcttgtatactacaccgaagttgtgtaacaaggtgctagttgtttgtt 29546053  T
Q  238 tgaaggtaacttcatctgt--gtttgtgttttagtctgatagatcacag 284  Q
    ||||||||||||||||| |  ||||||||||  ||||||||| ||||||    
T  29546054 tgaaggtaacttcatctttaagtttgtgtttaggtctgataggtcacag 29546102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 20924786 - 20925063
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgt-tctattcttgta 99  Q
    |||||||| || || ||||||||||||  |  |||||||  ||||||||||||||| ||||||| | |  |||||||| | |||||| |||| |||||||    
T  20924786 tataaaagaaatacttcaagacctaattgagaattcaagatgtcattctaaaaagtctagcttt-agggttttgagtcgt-atgtgtgtctactcttgta 20924883  T
Q  100 tcatgttgatgcaagtttagtac---cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    ||||||||||| |||||||||||    | |||||||||||||||||||||| |||||||||| ||| | |||| ||||| ||| ||||||||  ||||||    
T  20924884 tcatgttgatgtaagtttagtactatttattattgtgagcctttcttgtattgtttgtgatacatgctaaggattgtgtattgagttgtaaa-tcttgtg 20924982  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca-tctgtgtttgtgttttagtctgata 276  Q
    |||||| ||||||||  |||| |||||||||| ||| |||||||||||||||||| | | ||||| ||||||||| |||||    
T  20924983 tgctacaccaaagcttataagcaaggttgtagctgtttgtttgaaggtaacttcactgtttgtttatgttttagtttgata 20925063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 15438577 - 15438406
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||  | ||||||| ||||||| ||||||||||||| |||| | || ||||||||| |||||| || |||||||||    
T  15438577 tatataaggaagacttcaagacctaataaattattcaacccgtcatactaaaaagtttagatttttaggattttgagtctacatgtgctccattcttgta 15438478  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggact 171  Q
    || | | || ||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  15438477 tcgtttgtgttgcaagtctagaaccttt-attgtgagcctttcttgtatcgtttgtgatacatgtttaggact 15438406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26132606 - 26132858
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||||||||||||| ||| ||||| |  ||||||||||  ||||| ||| ||||||||    
T  26132606 tatataaggaagacttcaagacctaattaggtattcaagccgtcattctaaaaagtctag-ttttagggttttgagtctttgtgtgt-ctactcttgtat 26132703  T
Q  101 catgttgatgcaagtttagtac----cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    | ||||||||||||||||||||      ||| |||||| |||| |||||||| ||  ||||| ||||| |||| ||||||||| ||||| ||| | | ||    
T  26132704 cgtgttgatgcaagtttagtactgtttgtttgttgtgatccttgcttgtatc-ttcttgatacatgttaaggattgtgtgttgagttgt-aactcgt-tg 26132800  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatct 254  Q
    |||||| ||||| || ||||| |||||||||||||| |||||||||||||||||||||    
T  26132801 tgctacaccaaaacttttaagcaaggttgtagttgtttgtttgaaggtaacttcatct 26132858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 15506745 - 15506459
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||   || |||||||||  ||||| |  ||||||||| |||||| |  |||||||||    
T  15506745 tatataaggaagacttcaagacctaattgcttattcaagccgtca---tacaaagtttagatttttagggttttgagtctacatgtgcttcattcttgta 15506649  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || | | |||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||  | || |||||||     
T  15506648 tcgtttgtgatgcaagtctagaacc-tttattgtgagtctttcttgtatcgtttgtgatacatgtttaggactgtgtgttgagtttaatactcttgtgta 15506550  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttg-tctgtttgaaggtaacttca---tctgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||| || ||| ||| ||  |||||  |||||| | ||||||||||||||||||   | |||||||| ||||  ||||||||| |||||||    
T  15506549 ctacaccgaagttgtgaaacaaggtgctagttgttttgtttgaaggtaacttcaacttttgtgtttgagtttaggtctgataggtcacagg 15506459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 14165645 - 14165471
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||||||| |||||||||||| || | ||||||||||||||||||||| |||||| ||||  | |||||||||||| ||| || |  |||||||    
T  14165645 tataaaaggaagacttcaagacctaattgttc-attcaagccgtcattctaaaa-gtttagatttttagggtttgagtcttcgtgtattatgctcttgta 14165548  T
Q  100 tcatgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    |||||||||||||||||||| | | |||| |||| ||||| |||||||||  |||||||  ||||||||| |||||||    
T  14165547 tcatgttgatgcaagtttagaatc-tttaatgtgtgccttacttgtatcgcctgtgatacttgtttaggattgtgtgt 14165471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 20992022 - 20991736
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  |||||| ||||||| ||||||||||||| ||||  | |||| |||||| |||||| |||| |||||||    
T  20992022 tatataagggagacttcaagacctaattgatcattcaatccgtcatactaaaaagtttagatttttagggttttgagtctacatgtgctctactcttgta 20991923  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    |||| | |||||||||||||| || | | ||||||| ||||||||||||| |||||||||  |||||||||||||||| || |||  | || |||||||     
T  20991922 tcatttgtgatgcaagtttagaacatat-attgtgatcctttcttgtatcatttgtgatacttgtttaggactgtgtg-tgagtttgatactcttgtgta 20991825  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatctgtg--tttgtgttttagtctgatagatcacagg 285  Q
    |||| |  ||| ||| ||  |||||  ||||||| |||||||||||||||||| || ||  ||| |||||  ||||||||| |||||||    
T  20991824 ctacactgaagttgtgaaacaaggtgttagttgtttgtttgaaggtaacttcaactttgaatttttgtttaggtctgataggtcacagg 20991736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 16207560 - 16207735
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||    |||||||||| |||| ||||||||||||| ||||  | |||| ||||||| ||||| ||||||||||||    
T  16207560 tatataaggaagacttcaagacctaattgtttattcaagccatcatactaaaaagtttagatttttagggttttgagtctttatgtgctctattcttgta 16207659  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    || | | ||||| |||||||| |||||||   |||||||||||||||||||| |||||||  ||||||||| |||||||    
T  16207660 tcgtttgtgatgtaagtttagaacctttt---gtgagcctttcttgtatcgtctgtgatatttgtttaggattgtgtgt 16207735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 10661307 - 10661056
Alignment:
Q  37 aagccgtcattctaaaaag-tttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttattgtga 134  Q
    |||||||||  |||||||| ||||| ||||| |  ||||||||||  ||||||||| ||||||||| |||||||||||||||||| |  |||||||||||    
T  10661307 aagccgtcaaactaaaaaggtttagtttttagggttttgagtctttgtgtgttctactcttgtatcgtgttgatgcaagtttagtcctgttttattgtga 10661208  T
Q  135 gcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgta-gttgtc 233  Q
    |||||||||||||| | | ||||| ||| | |||||||| ||||| |||||||||   |||   |||| |||||| ||| ||| | |||  || || ||     
T  10661207 gcctttcttgtatcatct-tgatacatgctaaggactgtttgttgagttgtaaacttgtgtacactacaccaaagttgtgaagcacggtgttaggtagtt 10661109  T
Q  234 tgtttgaaggtaacttca-tctgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||||||||||||||||| | | |||||||||||  ||||||||| |||||||    
T  10661108 tgtttgaaggtaacttcactgtttgtttgtgtttaggtctgataggtcacagg 10661056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 285
Target Start/End: Complemental strand, 4459187 - 4458934
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtaccttttattg 131  Q
    |||||||||||||| ||||||||||||| ||||  | |||| |||||| ||||| ||||  |||||||||||||||||| |||||||| | | |||||||    
T  4459187 attcaagccgtcatactaaaaagtttagatttttagggttttgagtctacatgtattctgctcttgtatcatgttgatgaaagtttagaatc-tttattg 4459089  T
Q  132 tgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt-tgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagtt 230  Q
    |  ||||   ||||||||| |||||||  |||||| |||||||||| || |||  | || ||||||| |||| |||||| ||| || ||||||  |||||    
T  4459088 tatgcct---ttgtatcgtatgtgatacttgtttaagactgtgtgtgtgagtttgatactcttgtgtactacaccaaagttgtgaaataaggtgttagtt 4458992  T
Q  231 g--tctgtttgaaggtaacttcatctgtgtttgtgtttta-gtctgatagatcacagg 285  Q
    |  | ||||| ||||||||||||||| ||| | || |||| ||||||||| |||||||    
T  4458991 gtttgtgtttaaaggtaacttcatctttgtgtttggtttaggtctgataggtcacagg 4458934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 42636649 - 42636510
Alignment:
Q  50 aaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttattgtgagcctttcttgtatc 148  Q
    |||| |||||| ||||| |  ||||||||||  ||||||||| ||||||||| |||||||||||||||| | |  |||||||||||||||||||||||||    
T  42636649 aaaaggtttagtttttagggttttgagtctttgtgtgttctactcttgtatcgtgttgatgcaagtttaatcctattttattgtgagcctttcttgtatc 42636550  T
Q  149 gtttgtgataaatgtttaggactgtgtgttgggttgtaaac 189  Q
     | | ||||| ||||| |||||||| ||||| |||||||||    
T  42636549 atct-tgatacatgttaaggactgtttgttgagttgtaaac 42636510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 42783153 - 42783019
Alignment:
Q  88 tctattcttgtatcatgttgatgcaagtttagtac-cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgta 186  Q
    |||| |||||||||||||||||||||||||||| |  |||||||||||| |||||||||||| | | ||||||||| | |||||||| ||||| ||||||    
T  42783153 tctactcttgtatcatgttgatgcaagtttagttctgttttattgtgagtctttcttgtatcatat-tgataaatgctaaggactgtttgttgagttgta 42783055  T
Q  187 aacacttgtgtgctacgccaaagctgttaagtaagg 222  Q
    ||| | ||||  |||| || ||||| ||||| ||||    
T  42783054 aactcatgtgcactactccgaagcttttaagcaagg 42783019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 645606 - 645495
Alignment:
Q  9 gaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tg 107  Q
    |||||| ||||||||||||    ||||||||||||||| ||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||| | | ||    
T  645606 gaagacttcaagacctaattctttattcaagccgtcatactaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtttgtg 645507  T
Q  108 atgcaagtttag 119  Q
    ||||||||||||    
T  645506 atgcaagtttag 645495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 11999361 - 11999243
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| |||| ||||||| |  |||||||| |||||||||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||    
T  11999361 tatataaggaagacttcaaaacctaat-tgttattcaagtcgtcattctaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgtat 11999263  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  11999262 cgtttgtgatgcaagtttag 11999243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 11588943 - 11588769
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||| | ||||||||||||| ||||  | |||||||||||||||| ||||  |||||||    
T  11588943 tatataaggaagacttcaagacctaattgttc-attcaagccgtcttactaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgta 11588845  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    || | | |||||||||||||| |   | || |||| |  ||||||||||||||||||||||  || ||||||||||||||    
T  11588844 tcgtttgtgatgcaagtttagaa---tctactgtgtgttctttcttgtatcgtttgtgatacttg-ttaggactgtgtgt 11588769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 11521093 - 11521210
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||||||||||   |||  ||||  | |||||||||||||||| ||||  ||||||||    
T  11521093 tatataaggaagacttcaagacctaattgattattcaagccgtcattctaaaa--gttatatttttagggtttgagtcttcatgtattctgctcttgtat 11521190  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  11521191 cgtttgtgatgcaagtttag 11521210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 10038607 - 10038660
Alignment:
Q  195 tgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaact 248  Q
    |||||||| |||||||| | ||| |||||||||||| | |||||||||||||||    
T  10038607 tgtgctaccccaaagctttgaagcaaggttgtagttttgtgtttgaaggtaact 10038660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24902584 - 24902531
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaa 54  Q
    |||| ||||||||| ||||| |||||| |  |||||||||||||||||||||||    
T  24902584 tatataaggaagacttcaaggcctaatttggtattcaagccgtcattctaaaaa 24902531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7586210 - 7586262
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaa 53  Q
    |||| ||||||||| |||||| ||||| |  ||||||||||||||||||||||    
T  7586210 tatataaggaagacttcaagatctaatttggtattcaagccgtcattctaaaa 7586262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10038409 - 10038461
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaa 53  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||||||||||    
T  10038409 tatataaggaagacttcaagacctaattaggtattcaagccgtcattctaaaa 10038461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 23477615 - 23477900
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||    
T  23477615 tataaaaggaagccatcaagacctaatgtattattcaagccgtcattctaaaaagtttatcttttagggttttgagtcttcatgtgttctattcttgtat 23477714  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 200  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||| | ||||||||| ||||||||| ||||||||||    
T  23477715 catgt-gatgcaagtttagtaccttttattgtgatcctttcttgtatcttttgtgattcatgtttagaattgtgtgttgagttgtaaactcttgtgtgct 23477813  T
Q  201 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||||||||||  ||||||||||||| ||| ||||||||||||||    
T  23477814 acgccaaagctgttaagttaggttgtagttgtttatttgaaggtaacttcatctttgtgtttgtgtttaagtttgatagatcacagg 23477900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17851055 - 17851305
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||||||||||||| ||| ||||| |  ||||||||||  ||||||||| ||||||||    
T  17851055 tatataaggaagacttcaagacctaattgattattcaagccgtcattctaaaaagtgtagtttttagggttttgagtctttgtgtgttctactcttgtat 17851154  T
Q  101 catgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
    |  ||||||||||||||||| |  |||||||||||||||||||||||||  || ||||| ||||| |||||||||||||| ||||||||| |||||||||    
T  17851155 cgcgttgatgcaagtttagtcctgttttattgtgagcctttcttgtatcagtt-tgatacatgttaaggactgtgtgttgagttgtaaactcttgtgtgc 17851253  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    ||||||||| || ||||| |||||||||||||| ||||||||||||||||||    
T  17851254 tacgccaaaactattaagcaaggttgtagttgtttgtttgaaggtaacttca 17851305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 32 - 253
Target Start/End: Original strand, 15803821 - 15804042
Alignment:
Q  32 tattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtacc-ttttatt 130  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||| ||  ||||||||| ||||||||| |||||||||||||||||| |  |||||||    
T  15803821 tattcaagccgtcattctaaaaagtctagattttaggattttgagtatttgtgtgttctactcttgtatcgtgttgatgcaagtttagttctgttttatt 15803920  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagtt 230  Q
     |||||||||||||||||  || ||||| ||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  15803921 atgagcctttcttgtatcagtt-tgatacatgttaaggattgtgtgttgagttgtaaactcttgtgtgctacgccaaagcttttaagtaaggttgtagtt 15804019  T
Q  231 gtctgtttgaaggtaacttcatc 253  Q
    || ||||||||||||||||||||    
T  15804020 gtttgtttgaaggtaacttcatc 15804042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 285
Target Start/End: Original strand, 11667610 - 11667826
Alignment:
Q  71 tttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttagga 169  Q
    ||||||||| ||||||||||| | ||||||| | | |||| ||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||| ||||    
T  11667610 tttgagtctacatgtgttctacttttgtatcgtttgtgattcaagtttagaaccttt-attgtgatcctttcttgtatcgtttgtgatacatgttaagga 11667708  T
Q  170 ctgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttc--atctgtgtttgtgtttt 267  Q
    |||||||||| |||  | || ||||||| |||| || ||| | | ||  |||||  ||||||| |||||||| ||||||||  || || ||||||||||     
T  11667709 ctgtgtgttgagtttgatactcttgtgtactacaccgaagttatgaaacaaggtgttagttgtttgtttgaatgtaacttcatatttgagtttgtgttta 11667808  T
Q  268 agtctgatagatcacagg 285  Q
     ||||||||| |||||||    
T  11667809 ggtctgataggtcacagg 11667826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 24986372 - 24986226
Alignment:
Q  106 tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgcc 205  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||  | || ||||||| |||| ||    
T  24986372 tgatgcaagtttagaaccttt-attgtgagccttacttgtatcgtttgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgtactacacc 24986274  T
Q  206 aaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatct 254  Q
     ||| ||| ||  |||||  | ||||| | |||||||||||||||||||    
T  24986273 gaagttgtgaaacaaggtgttggttgt-tttttgaaggtaacttcatct 24986226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 12753509 - 12753352
Alignment:
Q  33 attcaagccgtcattctaaaaa-gtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttatt 130  Q
    |||||||||||||  ||||||| |||||| ||||| |  ||| ||||||  ||||||||| ||||||||| |||||||||||||||||| |  |||||||    
T  12753509 attcaagccgtcaaactaaaaaagtttagtttttagggtttttagtctttgtgtgttctactcttgtatcgtgttgatgcaagtttagttctgttttatt 12753410  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaac 189  Q
    |||||||||||||||||| | | ||||| ||| | |||||||| ||||| |||||||||    
T  12753409 gtgagcctttcttgtatcatct-tgatacatgctaaggactgtttgttgagttgtaaac 12753352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1626054 - 1625935
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    ||||||||||| || ||||||||||||  | ||||||||||||||||   |||||| ||| ||||| |  ||||||||||  ||||| ||| ||||||||    
T  1626054 tataaaaggaaaacttcaagacctaattgattattcaagccgtcatttctaaaagtctag-ttttagggttttgagtctttgtgtgt-ctactcttgtat 1625957  T
Q  101 catgttgatgcaagtttagtac 122  Q
    | ||||||||||||||||||||    
T  1625956 cgtgttgatgcaagtttagtac 1625935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 4246508 - 4246341
Alignment:
Q  9 gaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-t 106  Q
    |||||| |||||||||||| || | |||||||||| ||| ||||||||||||| ||||  | |||||||||||||||| || |  ||||||||| | | |    
T  4246508 gaagacttcaagacctaattgttc-attcaagccgccatactaaaaagtttagatttttagggtttgagtcttcatgtattttgctcttgtatcgtttgt 4246410  T
Q  107 gatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||||||||||||| |   | ||||||| |  |||||||||||||| |||||||  |||||||||||||||||    
T  4246409 gatgcaagtttagaa---tctattgtgtgttctttcttgtatcgtatgtgatatttgtttaggactgtgtgt 4246341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 25349882 - 25350038
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtc---ttc-atgtgt-tctattct 95  Q
    |||||||||||||| ||||||||||||    |||||||||| ||||||||||||| |||| ||||| |  ||||||||   |||  ||||| |||| |||    
T  25349882 tataaaaggaagacttcaagacctaatcaggtattcaagccatcattctaaaaagattagtttttagggttttgagtcgttttctttgtgtgtctactct 25349981  T
Q  96 tgtatcatgttgatgcaagtttagtac----cttttattgtgagcctttcttgtatc 148  Q
    |||||| |||||||| |||||||||||      ||||||||||||||||||||||||    
T  25349982 tgtatcgtgttgatgtaagtttagtactgtttgtttattgtgagcctttcttgtatc 25350038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 20840958 - 20841108
Alignment:
Q  16 tcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaa 113  Q
    ||||||||||||  |  ||| |||||||||| ||||||||||||| ||||  | |||| ||||||| ||||| | |||||||||||| | | ||||||||    
T  20840958 tcaagacctaattgatcatttaagccgtcatactaaaaagtttagatttttagtgttttgagtctttatgtgctatattcttgtatcgtttgtgatgcaa 20841057  T
Q  114 gtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttag 167  Q
    || ||  |||||||   ||||||||||||| |||| |||||||||  |||||||    
T  20841058 gtctataacctttt---gtgagcctttcttatatcatttgtgatacttgtttag 20841108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 26972085 - 26972180
Alignment:
Q  6 aaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatc 101  Q
    ||||||||| ||||||||||||     |||||||||||||| ||||| ||||||| ||||  | |||||||||||||||| ||||  |||||||||    
T  26972085 aaggaagacttcaagacctaattgttgattcaagccgtcatactaaatagtttagatttttagggtttgagtcttcatgtattctgctcttgtatc 26972180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13165873 - 13165773
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||| |||| || | ||||||| |||||| ||||||||||||| ||||  | |||||||||||||||| ||||  |||||||    
T  13165873 tatataaggaagacttcaagacataattgttc-attcaagtcgtcatactaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgta 13165775  T
Q  100 tc 101  Q
    ||    
T  13165774 tc 13165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24986462 - 24986403
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttag 60  Q
    |||| |||| |||| ||||||||||||  |  ||||||||||||||||||||||||||||    
T  24986462 tatataagggagacttcaagacctaatagatcattcaagccgtcattctaaaaagtttag 24986403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 1625922 - 1625799
Alignment:
Q  124 ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggt 223  Q
    |||||||||||| ||| ||||||||   | ||||| ||||| |||||| | | ||| ||||||||| |  |||| |||| |||||||| ||||| |||||    
T  1625922 ttttattgtgaggcttgcttgtatctcct-tgatacatgttaaggactatttattgagttgtaaactc--gtgtcctacaccaaagcttttaagcaaggt 1625826  T
Q  224 tgtagttgtctgtttgaaggtaacttca 251  Q
    ||||| | | ||||||||||||||||||    
T  1625825 tgtagat-tgtgtttgaaggtaacttca 1625799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26328894 - 26329146
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |  ||||||| | ||||||||||||||||||||    
T  26328894 tataaaaggaagacatcaagacctaatgaaccattcaagccgtcattctaaagagtttagcttttagggttttgagtatacatgtgttctattcttgtat 26328993  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| ||    
T  26328994 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgggatacatgtttaggactgtgtgttgagttgtaaacacttgtgttct 26329093  T
Q  201 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatct 254  Q
    || |||||||| ||||| |||||||||||| | ||||||| |||||||||||||    
T  26329094 acaccaaagcttttaagcaaggttgtagtt-tttgtttgatggtaacttcatct 26329146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 23624345 - 23624070
Alignment:
Q  11 agacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatg 110  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |   ||| |||| ||||||||||||||||||||||||||||||    
T  23624345 agacttcaagacctaatgaactattcaagccgtcattctaaaaagtttagcttttaggg--ttgggtctacatgtgttctattcttgtatcatgttgatg 23624248  T
Q  111 caagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagc 210  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| | ||||||||| ||||||| |||||  |||||    
T  23624247 caagtctagtaccttttattgtgagcctttcttgtatcgtttgtgatacatgctaaggactgtgtgtagagttgtaaactcttgtgttctacgaaaaagc 23624148  T
Q  211 tgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttg-tgtt-ttagtctgatagatcacagg 285  Q
    | ||||| |||||||||||| | ||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||    
T  23624147 ttttaagcaaggttgtagtt-tttgtttgaaggtaacttcatctttgtgtttgttgttgttagtctgatagatcacagg 23624070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18221589 - 18221303
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    ||||||||||||||| |||||||||||  |  |||||||| | ||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  18221589 tataaaaggaagacaacaagacctaattgatcattcaagcggacattctaaaaagtttagcttttagggttttgagtcttcatgtgttctattcttgtat 18221490  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||| | |||| |||| |||||||  |    
T  18221489 catgttgatgcaagtttagtaccttttattgtgagtctttcttgtatcatttgcgatacatgtttaggactgtgtgtagagttg-aaactcttgtgtttt 18221391  T
Q  201 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttgt--gttttagtctgatagatcacagg 285  Q
    |||  |||||| ||||| || ||||||||| | | ||||||||||||||||||  |||||||||   ||||||| |||| |||||||||    
T  18221390 acgataaagcttttaagaaaagttgtagtt-tttctttgaaggtaacttcatctttgtgtttgttgtttttagtttgatggatcacagg 18221303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30605371 - 30605655
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||  | |||| |||| | ||||||||||| |||||||    
T  30605371 tatataagggagacttcaagacctaatgaactattcaagccgtaattctaaaaagtttagatttttagggttttgagtatacatgtgttctactcttgta 30605470  T
Q  100 tcatgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||||||||  ||||||  ||||||||| |    
T  30605471 tcatgttgatgcaagtttagtaccttt-attgtgagcctttcttgtgtcgtttgtgatacatgttaaggactgtgtgttaagttgtattcacttgtgtac 30605569  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc-tgtgtttgtgtttta-gtctgatagatcaca 283  Q
    ||| ||||||||  |||| |||||  ||||||| |||||||||||||||||| | |  |||||||||||| ||||||||| |||||    
T  30605570 tacaccaaagcttgtaagcaaggtgttagttgtatgtttgaaggtaacttcaccgttagtttgtgttttaggtctgataggtcaca 30605655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 13339065 - 13338792
Alignment:
Q  2 ataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatc 101  Q
    ||||||| ||||||||||||||||||    |||||||| ||| |||   |||||  ||| ||||| |  ||||||||||  ||||||||  |||||||||    
T  13339065 ataaaagcaagacatcaagacctaattagttattcaagacgttatttctaaaaggctag-ttttagggttttgagtctttgtgtgttcttctcttgtatc 13338967  T
Q  102 atgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgcta 201  Q
     ||||||||||||||||||||||||||||||||| ||||||| ||||  || ||||| ||||| |||||||||| ||| ||||||||| |||||||||||    
T  13338966 gtgttgatgcaagtttagtaccttttattgtgagtctttcttatatcagtt-tgatacatgttaaggactgtgttttgagttgtaaactcttgtgtgcta 13338868  T
Q  202 cgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca-tctgtgtttgtgttttagtctgata 276  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | | ||||| | |||||||||||||    
T  13338867 cgccaaagctgttaagtaaggttgtagttgtttgtttgaaggtaacttcactgtttgtttattttttagtctgata 13338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 22082401 - 22082580
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtaccttttattg 131  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||     
T  22082401 attcaagctgtcattctaaaaagtttagctttta-gagttttgagtctacatgtgttctatttttgtatcatgttgatgcaaatttagtacc-tttatta 22082498  T
Q  132 tgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgt 213  Q
    ||| |||||||||| |||||||||||| ||||| | |||||| ||||| ||||||||| | ||||| |||| ||||||||||    
T  22082499 tgaacctttcttgtgtcgtttgtgatacatgttaatgactgtatgttgagttgtaaactcatgtgtactacaccaaagctgt 22082580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38405841 - 38405698
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||| ||||  | |||||||||| |||||||||||||||||| ||||  | |||| |||||| |||||| |||| |||||||    
T  38405841 tatataaggaagacttcaagacttaattgagtattcaagccttcattctaaaaagtttagatttttagtgttttgagtctacatgtgctctactcttgta 38405742  T
Q  100 tcatgttgatgcaagtttagtaccttttattgtgagcctttctt 143  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  38405741 tcatgttgatgcaagtttataaccttttattgtgagcctttctt 38405698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 20714420 - 20714669
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | ||||||| ||||||||   |||||| ||| ||||| |  ||||||| ||  ||||| ||| ||||||||    
T  20714420 tatataaggaagacttcaagacctaattgaatattcaaaccgtcatttctaaaagtctagtttttagggttttgagtttttgtgtgt-ctactcttgtat 20714518  T
Q  101 catgttgatgcaagtttagtacctttt----attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    | ||||||||||||||||||||  |||    |||||||| ||| |||||||| | | ||||| ||||| | |||||| ||||| ||||||| | | | ||    
T  20714519 cgtgttgatgcaagtttagtactgtttgtttattgtgagtcttgcttgtatcttct-tgatacatgttaaagactgtttgttgagttgtaa-ctcgt-tg 20714615  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttc 250  Q
    |||||| |||||| ||||||| |||||||||||||| |||||||||||||||||    
T  20714616 tgctacaccaaagttgttaagcaaggttgtagttgtttgtttgaaggtaacttc 20714669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 26037168 - 26037038
Alignment:
Q  125 tttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggtt 224  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||| || || |||| || |||| || ||| | ||| | |||||     
T  26037168 tttattgtgagcctttcttgtatcgtctttgatacatgtttaggactgtgtgttgagttttatactcttgggtactacaccgaagattttacgcaaggtg 26037069  T
Q  225 gtagttg-tctgtttgaaggtaacttcatct 254  Q
     |||||| | |||||||||||||||||||||    
T  26037068 ttagttgttgtgtttgaaggtaacttcatct 26037038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 23757968 - 23758107
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    |||||||| ||||| ||||||||||||| ||||  | |||| ||||||| ||||| |||||||||||||| | | |||||||||| ||| |||||||       
T  23757968 attcaagctgtcatactaaaaagtttagatttttagggttttgagtctttatgtgctctattcttgtatcgtttgtgatgcaagtctagaacctttt--- 23758064  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgt 173  Q
    ||||| |||||||||||||| |||||||  |||||||||||||    
T  23758065 gtgagtctttcttgtatcgtctgtgatacttgtttaggactgt 23758107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 23823424 - 23823563
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    |||||||| ||||| ||||||||||||| ||||  | |||| ||||||| ||||| |||||||||||||| | | |||||||||| ||| |||||||       
T  23823424 attcaagctgtcatactaaaaagtttagatttttagggttttgagtctttatgtgctctattcttgtatcgtttgtgatgcaagtctagaacctttt--- 23823520  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgt 173  Q
    ||||| |||||||||||||| |||||||  |||||||||||||    
T  23823521 gtgagtctttcttgtatcgtctgtgatacttgtttaggactgt 23823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26037259 - 26037195
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt 65  Q
    |||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  26037259 tatataagggagacttcaagacctaatgaactattcaagccgtcattctaaaaagtttagatttt 26037195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 23420268 - 23420395
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattg 131  Q
    |||||||||||||| ||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||| | | |||||||||||||| | || ||| ||    
T  23420268 attcaagccgtcatactaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtttgtgatgcaagtttagaatctcttactg 23420367  T
Q  132 tgag-cctttcttgtatcgtttgtgata 158  Q
    || |  |||| |||||||||||||||||    
T  23420368 tgtgttctttattgtatcgtttgtgata 23420395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 22404442 - 22404615
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | |||||||||||||||||| |||| ||||| ||||  | |||||||||||||| | || |  ||||||||    
T  22404442 tatataaggaagacttcaagacctaattgattattcaagccgtcattct-aaaattttagatttttagggtttgagtcttcatttattatgctcttgtat 22404540  T
Q  101 catgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||| | |||||||||||||| | ||  || ||||   ||||||||||||||||||||||  || ||||||||||||||    
T  22404541 catttgtgatgcaagtttagaatctacta-tgtg-ttctttcttgtatcgtttgtgatacttg-ttaggactgtgtgt 22404615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 22184409 - 22184528
Alignment:
Q  128 attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgta 227  Q
    |||||||||||||||| |||| | | ||||| ||||| |||| ||| | ||| ||||||||| |||||||||||| ||||||||  |||| ||||| |||    
T  22184409 attgtgagcctttcttttatcatct-tgatacatgttaaggattgtttattgagttgtaaactcttgtgtgctacaccaaagcttgtaagcaaggtcgta 22184507  T
Q  228 gttgtctgtttgaaggtaact 248  Q
    ||  | |||||||||||||||    
T  22184508 gtgttttgtttgaaggtaact 22184528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9422195 - 9422313
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| |||| ||||||| |  ||||||||||||||||||||||||||||| ||||  | | |||||||||||||| || |  ||||||||    
T  9422195 tatataaggaagacttcaatacctaat-tgttattcaagccgtcattctaaaaagtttagatttttagggattgagtcttcatgtattatgctcttgtat 9422293  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  9422294 cgtctgtgatgcaagtttag 9422313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 24190341 - 24190222
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||| ||||||||||||| ||||  | |||| ||||||||||| ||||  | |||||    
T  24190341 tatataaggaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtttagatttttagggttttagtcttcatgtattctgcttttgta 24190243  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  24190242 tcgtttgtgatgcaagtttag 24190222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25105125 - 25105242
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| |||||||||||| |   ||||||||| |||||||||||   |||| ||||  | |||||||||||||||| ||||| ||||||||    
T  25105125 tatataaggaagacttcaagacctaatttttcattcaagccatcattctaaaa--gttagatttttagggtttgagtcttcatgtattctactcttgtat 25105222  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  25105223 cgtttgtgatgcaagtttag 25105242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 25164218 - 25164335
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| |||||||||||| |   ||||||||| |||||||||||   |||| ||||  | |||||||||||||||| ||||| ||||||||    
T  25164218 tatataaggaagacttcaagacctaatttttcattcaagccatcattctaaaa--gttagatttttagggtttgagtcttcatgtattctactcttgtat 25164315  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  25164316 cgtttgtgatgcaagtttag 25164335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 9522873 - 9522754
Alignment:
Q  129 ttgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtag 228  Q
    |||||||||||||| |||||   | ||||| ||||| |||||||| | ||| |||||||   || ||||||||| |||||||| | ||| ||||||||||    
T  9522873 ttgtgagcctttctagtatcacct-tgatacatgttaaggactgtttattgagttgtaa---ctcgtgtgctacaccaaagctttgaagcaaggttgtag 9522778  T
Q  229 ttgtctgtttgaaggtaacttcatc 253  Q
    || | ||||||||||||||||||||    
T  9522777 tt-tgtgtttgaaggtaacttcatc 9522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22251721 - 22251819
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||||||||||   |||| ||||  | |||||||||||||||| ||||  |||||||    
T  22251721 tatataaggaagacttcaagacctaattgttc-attcaagccgtcattctaaaa--gttagatttttagggtttgagtcttcatgtattctgctcttgta 22251817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 13941878 - 13941935
Alignment:
Q  194 gtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc 253  Q
    ||||||||| |||||||| | ||| |||||||||||  | ||||||||||||||||||||    
T  13941878 gtgtgctacaccaaagctttgaagcaaggttgtagt--tttgtttgaaggtaacttcatc 13941935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 26885 - 26597
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagttt-agcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||||||||||||||||||||  | |||||||||| |||||||||||||||| |||||||| |  ||| |||||||||||||||||||||||||    
T  26885 tataaaaggaagacatcaagacctaattgattattcaagccatcattctaaaaagttttagcttttagggttttaagtcttcatgtgttctattcttgta 26786  T
Q  100 tcatgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| | |||| |||| ||||||| |    
T  26785 tcatgttgatgcaagtttagtaccttttattgcgagcctttcttgtatcgtatgtgatacatgtttaggactgtgtgtagagttggaaactcttgtgttc 26686  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttg-tgtt-ttagtctgatagatcacagg 285  Q
    |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||    
T  26685 tacgccaaagcttttaagcaaggttgtagtt-tttgtttgaaggtaacttcatctttgtgtttgttgttgttagtctgatagatcacagg 26597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 28051603 - 28051329
Alignment:
Q  16 tcaagacctaatgta-ctattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaag 114  Q
    ||||||||||||| | | ||||||| |||||||| ||||||||||||| ||| |  ||||||||| ||||||||||||||||||||||||||||||||||    
T  28051603 tcaagacctaatgaaacaattcaagacgtcattcaaaaaagtttagctgttagggttttgagtctacatgtgttctattcttgtatcatgttgatgcaag 28051504  T
Q  115 tttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgtt 214  Q
    |||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |||||| || | ||||| |||| | |||||| |     
T  28051503 tttattaccttttattgtgagcctttcttgtgtcgtttgtgatacatgttaaggactgtgtgttgagttgtatactcatgtgtactactcaaaagctctg 28051404  T
Q  215 aagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttgt--gttttagtctgatagatcacagg 285  Q
    ||||| |||||||||||| ||||||||||||||||||||  |||||||||   ||||||||||||||||||||||    
T  28051403 aagtacggttgtagttgtttgtttgaaggtaacttcatctttgtgtttgttgtttttagtctgatagatcacagg 28051329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 283
Target Start/End: Complemental strand, 295889 - 295655
Alignment:
Q  44 cattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtaccttttattgtgagcctttct 142  Q
    ||||||||||| ||||| |||| | || ||||| ||| |||||| |||| |||| ||||||||||||| |||||||| |||||||||||||||||||| |    
T  295889 cattctaaaaattttagatttttaggattttgattctacatgtgctctactcttatatcatgttgatgtaagtttagaaccttttattgtgagcctttgt 295790  T
Q  143 tgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaag 242  Q
    ||| |||||||||||| ||||| |||||||||||||| |||       | ||| | |||| |||||| ||| |||||||||  || |||| |||||||||    
T  295789 tgtgtcgtttgtgatacatgttaaggactgtgtgttgagtt-------catgtttactacaccaaagttgtgaagtaaggtactacttgtttgtttgaag 295697  T
Q  243 gtaacttcatctg--tgtttgtgttttagtctgatagatcaca 283  Q
    |||| ||||||||  ||||||| ||||||||||||||||||||    
T  295696 gtaaattcatctgtttgtttgt-ttttagtctgatagatcaca 295655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 286576 - 286829
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||||   || ||| ||| ||||| |  ||||||||||  ||||| ||| ||||||||    
T  286576 tatataaggaagacttcaagacctaattaggtattcaagccgtcatttctaagagtctagtttttagggttttgagtctttgtgtgt-ctactcttgtat 286674  T
Q  101 catgttgatgcaagtttagtacctttt----attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    | ||| |||||||||||||||   |||    ||||||||||||||||||||| | | ||||| ||||| |||||||||||||| |||||||    |||||    
T  286675 cgtgtagatgcaagtttagtattgtttgtttattgtgagcctttcttgtatcttct-tgatacatgttaaggactgtgtgttgagttgtaagtcattgtg 286773  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatct 254  Q
      |||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  286774 --ctacaccaaagcttttaagcaaggttgtagttgtttgtttgaaggtaacttcatct 286829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 13515280 - 13515450
Alignment:
Q  6 aaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatg 104  Q
    ||||||||| ||||||| |||| ||  |||||||||||||| ||||||||||||| ||||  | |||| ||||||| ||||| |||||||||||||| |     
T  13515280 aaggaagacttcaagacttaatttatcattcaagccgtcatactaaaaagtttagatttttagggttttgagtctttatgtgctctattcttgtatcgtt 13515379  T
Q  105 t-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    | |||||||||| ||| |||||||   ||||||||||||||||| ||||||||||  |||||||||||||||||    
T  13515380 tgtgatgcaagtctagaacctttt---gtgagcctttcttgtattgtttgtgatacttgtttaggactgtgtgt 13515450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 21253684 - 21253925
Alignment:
Q  9 gaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgt-tctattcttgtatcatgtt 106  Q
    ||||||||||||||||||| || | ||||||||| |||||||||||||||||| || || |  ||||||||||  ||||| |||| ||| ||||| ||||    
T  21253684 gaagacatcaagacctaat-tattcattcaagccctcattctaaaaagtttagtttgtagggttttgagtctt-ttgtgtgtctactctagtatcgtgtt 21253781  T
Q  107 gatgcaagtttagtac-cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgcc 205  Q
    ||||||||||||||||  ||||||||||||||| |||| |||| | | ||||| ||| | |||||||| ||||| ||||||||| | | ||||||||  |    
T  21253782 gatgcaagtttagtactgttttattgtgagcctatcttatatcatct-tgatacatgctaaggactgtttgttgagttgtaaactcgt-tgtgctacaac 21253879  T
Q  206 aaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    ||||||  |||| | ||| |||||||| ||||||||| ||||||||    
T  21253880 aaagcttgtaagcatggtcgtagttgtttgtttgaagctaacttca 21253925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 285
Target Start/End: Original strand, 17042464 - 17042719
Alignment:
Q  33 attcaagccgtcattctaaaaagttt-agcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttatt 130  Q
    |||||||||||||  ||||||||||| || || || |  ||||||||||  ||||||||| ||||||| | |||||||||||||||||| |  |||||||    
T  17042464 attcaagccgtcaaactaaaaagttttagtttgtagggttttgagtctttgtgtgttctactcttgtaacgtgttgatgcaagtttagttctattttatt 17042563  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgta-gt 229  Q
    |||||||||||||||||| | | ||||| ||| | |||||||| ||||| ||||||||| | |||   |||| |||||||||| ||| | |||  || ||    
T  17042564 gtgagcctttcttgtatcatct-tgatacatgctaaggactgtttgttgagttgtaaactcgtgtacactacaccaaagctgtgaagcacggtgttaggt 17042662  T
Q  230 tgtctgtttgaaggtaacttcatc-tgtgtttgtgttttagtctgatagatcacagg 285  Q
     || |||||||||||||||||| | | |||||||||||  ||||||||| |||||||    
T  17042663 agtttgtttgaaggtaacttcaccgtttgtttgtgtttaggtctgataggtcacagg 17042719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 19634360 - 19634204
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||     |||||||||||||| ||||||||||||| ||||  | |||| ||||||| ||||| ||||||||||||    
T  19634360 tatataaggaagacttcaagacctaattgttaattcaagccgtcatactaaaaagtttagatttttagggttttgagtctttatgtgctctattcttgta 19634261  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgata 158  Q
    || | | |||||||||| ||| |||||||   |||||||||||||||||||| |||||||    
T  19634260 tcgtttatgatgcaagtctagaacctttt---gtgagcctttcttgtatcgtctgtgata 19634204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 6579263 - 6579506
Alignment:
Q  37 aagccgtcattctaaaaag-tttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttattgtga 134  Q
    |||||||||  |||||||| ||||| ||||| |  ||||||||||  ||||||||| ||||||||| |||||||||||||||||| |  |||||||||||    
T  6579263 aagccgtcaaactaaaaaggtttagtttttagggttttgagtctttgtgtgttctactcttgtatcgtgttgatgcaagtttagtcctgttttattgtga 6579362  T
Q  135 gcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgta-gttgtc 233  Q
    |||||||||||||| | | ||||| ||| | |||| ||| ||||| ||||||||| | |||   |||| |||||||||| ||| | | |  || || ||     
T  6579363 gcctttcttgtatcatct-tgatacatgctaaggattgtttgttgagttgtaaactcgtgtacactacaccaaagctgtgaagcacgatgttaggtagtt 6579461  T
Q  234 tgtttgaaggtaacttcatc-tgtgtttgtgttttagtctgatag 277  Q
    |||||||||||||||||| | | |||||||||||  |||||||||    
T  6579462 tgtttgaaggtaacttcaccgtttgtttgtgtttaggtctgatag 6579506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 18063887 - 18064064
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgt 98  Q
    |||| ||||||||| |||| ||||||| || | |||||||||||||| |||||||||||||  |||||||  |||||||||| ||||| |||| || |||    
T  18063887 tatataaggaagacttcaatacctaattgttc-attcaagccgtcatactaaaaagtttagatttttacggttttgagtctttatgtgctctactcatgt 18063985  T
Q  99 atcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||| | | |||||||||||||| |||| ||||||||  || ||||||||||||||||| ||  ||||||||| |||||||    
T  18063986 atcgtttgtgatgcaagtttagaacctcttattgtgttcc-ttcttgtatcgtttgtgctacttgtttaggattgtgtgt 18064064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 18034576 - 18034753
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||| ||||| |||||||||||| |   |||||||||||||| |||||||||||||  ||||| |  |||||||||| ||||| |||| |||||||    
T  18034576 tatataagtaagacttcaagacctaatttttcattcaagccgtcatactaaaaagtttagatttttagggttttgagtctttatgtgctctactcttgta 18034675  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    |  | | |||||||||||||| |||| ||| | ||  || ||||||||||||||||||||  ||||||||| |||||||    
T  18034676 ttgtttgtgatgcaagtttagaacctcttactatgttcc-ttcttgtatcgtttgtgatacttgtttaggagtgtgtgt 18034753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 44452962 - 44452863
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||| ||||| |||||||||||| |  ||||||||||||||||||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||    
T  44452962 tatataagaaagacttcaagacctaat-tgttattcaagccgtcattctaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgtat 44452864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 21718720 - 21718858
Alignment:
Q  110 gcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaag 209  Q
    |||| ||||||||  |||||||||||||||||||||||| | | ||||| ||||| |||||||| | ||| ||||||||| | | |||||||| |||||     
T  21718720 gcaaatttagtacagtttattgtgagcctttcttgtatcatct-tgatacatgttaaggactgtttattgagttgtaaactcgt-tgtgctacaccaaa- 21718816  T
Q  210 ctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    ||  |||| |||||  ||||||| ||||||||||||||||||    
T  21718817 cttgtaagcaaggtcatagttgtttgtttgaaggtaacttca 21718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 24196003 - 24195884
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||| ||||||||||||| ||||  | |||||||||||||||| |||   |||||||    
T  24196003 tatataaggaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtttagatttttagggtttgagtcttcatgtattcgtctcttgta 24195905  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  24195904 tcgtttgtgatgcaagtttag 24195884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 15635583 - 15635670
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    |||||||||||||| ||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||| | | ||||||||||||||    
T  15635583 attcaagccgtcatactaaaaagtttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtttgtgatgcaagtttag 15635670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 18548096 - 18548009
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    |||||||||||||||||||||||||||| ||||    |||||||||||||||| ||||  ||||||||| | | ||||||||||||||    
T  18548096 attcaagccgtcattctaaaaagtttagatttttaaggtttgagtcttcatgtattctgctcttgtatcgtttgtgatgcaagtttag 18548009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13791156 - 13791058
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||||||||||   |||| ||||  | |||||||||||||||| ||||  ||||||||    
T  13791156 tatataaggaagacttcaagacctaattgattattcaagccgtcattctaaaa--gttagatttttagggtttgagtcttcatgtattctgctcttgtat 13791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 17702854 - 17702767
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    ||||||||| |||| ||||||||||||| ||||  | |||||||||||||||| ||||  ||||||||| | | ||||||||||||||    
T  17702854 attcaagccatcatactaaaaagtttagatttttagggtttgagtcttcatgtattctcgtcttgtatcgtttgtgatgcaagtttag 17702767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 18483053 - 18483226
Alignment:
Q  1 tataaaaggaagacatcaagacctaa-tgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||| ||| | ||||||| ||||||||| |||||||||| ||||  | ||||||||||| |||| || |  |||||||    
T  18483053 tatataaggaagacttcaagacctaattgttc-attcaagtcgtcattct-aaaagtttagatttttagggtttgagtctttatgtattatgctcttgta 18483150  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    |||| | |||||||||||||| |   ||||||||| |  ||||||||||| || |||||||  || ||||||||||||||    
T  18483151 tcatttgtgatgcaagtttagaa---tttattgtgtgttctttcttgtattgtctgtgatacttg-ttaggactgtgtgt 18483226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 20748067 - 20748129
Alignment:
Q  226 tagttgtctgtttgaaggtaacttca---tctgtgtttgtgttttagtctgatagatcacagg 285  Q
    ||||||| ||||||||||||||||||   | |||||||||||||  |||||||||||||||||    
T  20748067 tagttgtttgtttgaaggtaacttcaatttttgtgtttgtgtttaggtctgatagatcacagg 20748129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 15674975 - 15675033
Alignment:
Q  194 gtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc 253  Q
    ||||||||| |||||||| | ||| |||||||||||| | ||||||||||||||||||||    
T  15674975 gtgtgctacaccaaagctttgaagcaaggttgtagtt-tatgtttgaaggtaacttcatc 15675033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 18477183 - 18477124
Alignment:
Q  226 tagttgtctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatagatcaca 283  Q
    ||||||| ||||||||||||||||||||  || ||||||||||  ||||||||| |||||    
T  18477183 tagttgtttgtttgaaggtaacttcatcattgagtttgtgtttaggtctgataggtcaca 18477124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 29253361 - 29253548
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    ||||||||||||||| |||||||||||  |  || |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  29253361 tataaaaggaagacaacaagacctaattgatcatccaagccatcattctaaaaagtttagcttttaggattttgagtcttcatgtgttctattcttgtat 29253460  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaa 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | ||||||||    
T  29253461 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcatttgtgatacatgtttaggactgtgtgtagagttgtaaa 29253548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 33 - 285
Target Start/End: Original strand, 17864137 - 17864391
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtaccttttattg 131  Q
    |||||||||||||||||| ||||||||| ||||  | |||| |||||| |||||| |||| ||||||||||||||||||||||||||| |||||| ||||    
T  17864137 attcaagccgtcattctataaagtttagatttttggggttttgagtctacatgtgctctactcttgtatcatgttgatgcaagtttagaaccttt-attg 17864235  T
Q  132 tgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttg 231  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| |||  | || ||||||| |||| |||||| ||| ||  |||||   |||||    
T  17864236 tgagcctttcttgtatcgtctgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgtactacaccaaagttgtaaaacaaggtgtgagttg 17864335  T
Q  232 tctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatagatcacagg 285  Q
    | ||||||||||||||||||||  || ||||||||||  ||||||||| |||||||    
T  17864336 tttgtttgaaggtaacttcatctttgagtttgtgtttaggtctgataggtcacagg 17864391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 23882377 - 23882627
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||| | ||||||||||||  |  ||||||||||||||| || ||||||||| ||||| |  ||||||||||  ||||||||| ||||||||    
T  23882377 tatataaggaaggcttcaagacctaattgatcattcaagccgtcattatataaagtttagattttagggttttgagtctttgtgtgttctactcttgtat 23882476  T
Q  101 catgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
    | ||||||| |||||||||| |  |||||||||||||||||||||||||  || ||||| ||||| |||||||||||||| ||| ||||| |||||||||    
T  23882477 cgtgttgattcaagtttagtcctgttttattgtgagcctttcttgtatcagtt-tgatacatgttaaggactgtgtgttgagttataaactcttgtgtgc 23882575  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||||||| ||||    
T  23882576 tacgccaaagttgttaagcaaggttgcagttgtttgtttgaaggtaaattca 23882627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 8465351 - 8465637
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  |||||||||||||  ||||||||||||| |||| | |  ||||||||| |||||| |||| |||||||    
T  8465351 tatataagggagacttcaagacctaattgatcattcaagccgtcacactaaaaagtttagatttttaaggttttgagtctacatgtgctctactcttgta 8465450  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || | | |||||||||||||| |||| | |||||||  |||||||||||||| |||||||  |||||||||||||||| || |||  | |  |||||||     
T  8465451 tcgtttatgatgcaagtttagaacctat-attgtgattctttcttgtatcgtctgtgatacttgtttaggactgtgtg-tgcgtttgatagtcttgtgta 8465548  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca--tctgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||| || ||| ||| ||  |||||  ||||||| ||||||||||||||||||  | || ||||||||||  ||||||||| |||||||    
T  8465549 ctacaccgaagttgtgaaagaaggtgttagttgtttgtttgaaggtaacttcacctttgagtttgtgtttaggtctgataggtcacagg 8465637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 20465606 - 20465751
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    |||||||  ||||| ||||||||||||| ||||  | |||| |||||| |||||| ||||||||| |||| | | |||||||||||||| |||| | |||    
T  20465606 attcaagttgtcatactaaaaagtttagatttttagggttttgagtctacatgtgctctattcttttatcttttgtgatgcaagtttagaacctat-att 20465704  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    |||| |||||||||||||||||||||||  |||||||||||||||||    
T  20465705 gtgaacctttcttgtatcgtttgtgatacttgtttaggactgtgtgt 20465751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17869595 - 17869844
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||||||||||||| ||||||||||||  | ||| ||||||||||||   |||||| | | ||||| |  ||||||| ||  ||||| ||| ||||||||    
T  17869595 tataaaaggaagacttcaagacctaattgattatgcaagccgtcatttctaaaagtctgg-ttttagggttttgagtatttgtgtgt-ctactcttgtat 17869692  T
Q  101 catgttgatgcaagtttagtacctttt----attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    ||||||| ||||||||||||||  |||    |||| |||||||||||||||| | | ||||| | ||| |||| ||| ||||| ||||||| | | | ||    
T  17869693 catgttggtgcaagtttagtactgtttgtttattgcgagcctttcttgtatcttct-tgatacaagttaaggattgtttgttgagttgtaa-ctcgt-tg 17869789  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    |||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||    
T  17869790 tgctacaccaaaacttttaagcaaggttgtagttgtttgtttgaaggtaacttca 17869844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17879347 - 17879596
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||||||||||||| ||||||||||||  | ||| ||||||||||||   |||||| | | ||||| |  ||||||| ||  ||||| ||| ||||||||    
T  17879347 tataaaaggaagacttcaagacctaattgattatgcaagccgtcatttctaaaagtctgg-ttttagggttttgagtatttgtgtgt-ctactcttgtat 17879444  T
Q  101 catgttgatgcaagtttagtacctttt----attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtg 196  Q
    ||||||| ||||||||||||||  |||    |||| |||||||||||||||| | | ||||| | ||| |||| ||| ||||| ||||||| | | | ||    
T  17879445 catgttggtgcaagtttagtactgtttgtttattgcgagcctttcttgtatcttct-tgatacaagttaaggattgtttgttgagttgtaa-ctcgt-tg 17879541  T
Q  197 tgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    |||||| ||||| || ||||| |||||||||||||| ||||||||||||||||||    
T  17879542 tgctacaccaaaacttttaagcaaggttgtagttgtttgtttgaaggtaacttca 17879596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 12039428 - 12039565
Alignment:
Q  41 cgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattgtgagcct 138  Q
    |||||| ||||||||||||| ||||  | |||| |||||| |||||| |||| ||||||||| | | |||||||||||||| |||| || |||||| |||    
T  12039428 cgtcatactaaaaagtttagatttttagggttttgagtctacatgtgctctactcttgtatcgtttgtgatgcaagtttagaacctatt-ttgtgatcct 12039526  T
Q  139 ttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||||||||| ||||||||||  |||||||||||||||||    
T  12039527 ttcttgtattgtttgtgatacttgtttaggactgtgtgt 12039565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 23879359 - 23879247
Alignment:
Q  6 aaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt 105  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||||| |||||| |||| || |||||||||||||||| ||||  ||||||||| | |    
T  23879359 aaggaagacttcaagacctaatgttc-attcaagccgtcattctaaaa-gtttagatttttcgggtttgagtcttcatgtattctgctcttgtatcgttt 23879262  T
Q  106 -tgatgcaagtttag 119  Q
     ||||||||||||||    
T  23879261 gtgatgcaagtttag 23879247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 29254778 - 29254880
Alignment:
Q  184 gtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc--tgtgtttgt--gttttagtctgatagat 279  Q
    |||||| ||||||| ||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||  |||||||||   ||||||||||||||||    
T  29254778 gtaaactcttgtgttctatgccaaagcttttaagtaaggttgtagtt-tttgtttgaaggtaacttcatctttgtgtttgttgtttttagtctgatagat 29254876  T
Q  280 caca 283  Q
    ||||    
T  29254877 caca 29254880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 260
Target Start/End: Complemental strand, 11960870 - 11960694
Alignment:
Q  83 tgtgttctattcttgtatcatgttgatgcaagtttagtacctttt----attgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgtt 178  Q
    ||||||||  ||||||||| ||||||||||||| ||| ||  |||    ||||||||||||||||||||| ||| ||| | | ||| |||||||| | ||    
T  11960870 tgtgttcttctcttgtatcgtgttgatgcaagtctaggactgtttgttaattgtgagcctttcttgtatctttt-tgacacaggttaaggactgtttatt 11960772  T
Q  179 gggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatctgtgttt 260  Q
    | |||||||   || ||||||||| |||||||| | ||| |||||||||||| | ||||||||||||||||||| |||||||    
T  11960771 gagttgtaa---ctcgtgtgctacaccaaagctttaaagcaaggttgtagtt-tgtgtttgaaggtaacttcatttgtgttt 11960694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 14259396 - 14259278
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||  |  ||||||| ||||||  |||||||||||| ||||  | |||| ||||||| |||| ||||| |||||||    
T  14259396 tatataaggaagacttcaagacctaattgatcattcaagtcgtcatattaaaaagtttagatttttagggttttgagtctttatgtattctactcttgta 14259297  T
Q  100 tcatgttgatgcaagttta 118  Q
    |||||||||||||||||||    
T  14259296 tcatgttgatgcaagttta 14259278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 24542124 - 24541944
Alignment:
Q  10 aagacatcaagacctaatgtactattcaagccgtcattctaaaaag-tttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttga 108  Q
    ||||| ||||||||||||    ||||||||||||||  |||||||| ||||| ||||| |  |||||||| |  ||||||||| |||||||| |||||||    
T  24542124 aagacttcaagacctaattatttattcaagccgtcaaactaaaaaggtttagtttttagggttttgagtcgttgtgtgttctactcttgtattatgttga 24542025  T
Q  109 tgcaagtttagtac-cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaac 189  Q
    |||||||||||| |  |||||||||||| |||| ||||||| | | ||||| ||| | |||||| | ||||| |||||||||    
T  24542024 tgcaagtttagttctgttttattgtgagtcttttttgtatcatct-tgatacatgctaaggactatttgttgagttgtaaac 24541944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 21323044 - 21323210
Alignment:
Q  88 tctattcttgtatcatgttgatgcaagtttagtac-cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgta 186  Q
    |||| ||||||||| ||||||||||||||||||||  |||||||||||||||||| |||| | | | ||||| ||| | |||||||| | ||| ||||||    
T  21323044 tctactcttgtatcgtgttgatgcaagtttagtactgttttattgtgagcctttcgtgtaacatct-tgatacatgataaggactgtttattgagttgta 21323142  T
Q  187 aacacttgtgtgctacgccaaagctgttaagtaaggttgtagttg-tctgtttgaaggtaacttcatct 254  Q
    ||| | | |||||||| |||| | | ||||  ||||| ||||||| | |||||||||||||||||||||    
T  21323143 aactcgt-tgtgctacaccaatgattttaaacaaggtcgtagttgttttgtttgaaggtaacttcatct 21323210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 21723117 - 21723257
Alignment:
Q  32 tattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgtt-gatgcaagtttagtaccttttatt 130  Q
    |||||| ||||||||||||||| |||||| ||||  | |||||||||||||||| ||||   |||||||||| || |||||| |||||| | |||| | |    
T  21723117 tattcatgccgtcattctaaaa-gtttagatttttagggtttgagtcttcatgtattctgcacttgtatcatttttgatgcaggtttagaatcttt-act 21723214  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgt 173  Q
    ||| |||||||||||||||  |||||||  |||||||||||||    
T  21723215 gtgtgcctttcttgtatcggctgtgatacttgtttaggactgt 21723257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 17235066 - 17234899
Alignment:
Q  9 gaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-t 106  Q
    |||||| |||||||||||| || | |||||||||||||| ||||||||||||| | ||  | |||| ||||||||||| ||||  ||||||||| | | |    
T  17235066 gaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtttagatctttagggttttagtcttcatgtattctgctcttgtatcgtttgt 17234968  T
Q  107 gatgcaagtttagtaccttttattgtgagc-ctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||||||||||||| | ||   | |||| |  ||||||||||||||||||||||  |||||||||||||||||    
T  17234967 gatgcaagtttagaatct---aatgtgtgttctttcttgtatcgtttgtgatacttgtttaggactgtgtgt 17234899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 19077623 - 19077504
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgt 98  Q
    |||| ||||||||| |||||||||||| || | ||||||||||| || ||||||||||||| ||||  | |||| ||||||| |||| ||||  ||||||    
T  19077623 tatataaggaagacttcaagacctaattgttc-attcaagccgtaatactaaaaagtttagatttttagggttttgagtctttatgtattctgctcttgt 19077525  T
Q  99 atcatgttgatgcaagtttag 119  Q
    |||||||| ||||||||||||    
T  19077524 atcatgttcatgcaagtttag 19077504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25969820 - 25969702
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||| |||||||||| || ||||  | |||||||||||||||||||||  |||||||    
T  25969820 tatataaggaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtt-agatttttagggtttgagtcttcatgtgttctgctcttgta 25969723  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  25969722 tcgtttgtgatgcaagtttag 25969702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 25974260 - 25974142
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||| |||||||||| || ||||  | |||||||||||||||||||||  |||||||    
T  25974260 tatataaggaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtt-agatttttagggtttgagtcttcatgtgttctgctcttgta 25974163  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  25974162 tcgtttgtgatgcaagtttag 25974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 177
Target Start/End: Original strand, 9281393 - 9281561
Alignment:
Q  6 aaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatg 104  Q
    ||||||||| |||||||||||| || | |||||||| |||||||||||| |||||  |||   | |||||||||||||||| ||||  |||||||||||     
T  9281393 aaggaagacttcaagacctaattgttc-attcaagcagtcattctaaaa-gtttaaatttgtagggtttgagtcttcatgtattctgctcttgtatcatt 9281490  T
Q  105 t-tgatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    | |||||||||||||| |   | ||||||| |  ||||||||||||||||||||||  || ||||||||||||||    
T  9281491 tgtgatgcaagtttagaa---tctattgtgtgttctttcttgtatcgtttgtgatacttg-ttaggactgtgtgt 9281561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 17527565 - 17527684
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| | |||||||||| | || |||||||||||||| |||||||||||||  |||  | |||||||||||||||| ||||  |||||||    
T  17527565 tatataaggaagactttaagacctaat-tgctcattcaagccgtcatactaaaaagtttagaattttagggtttgagtcttcatgtattctgctcttgta 17527663  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  17527664 tcgtttgtgatgcaagtttag 17527684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 19100374 - 19100204
Alignment:
Q  6 aaggaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatg 104  Q
    ||||||||| |||||||||||| |  | ||||||||||||||  ||| |||||||| ||||| | |||||||||||||||| ||||  ||||||||| |     
T  19100374 aaggaagacttcaagacctaatttttttattcaagccgtcatagtaacaagtttagattttagg-gtttgagtcttcatgtattctgctcttgtatcgtt 19100276  T
Q  105 t-tgatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    | |||||||||||||| |   | || |||| |  |||||||||||||| |||||||  ||||||||| |||||||    
T  19100275 tgtgatgcaagtttagaa---tctactgtgtgttctttcttgtatcgtctgtgatacttgtttaggattgtgtgt 19100204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15930527 - 15930590
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttt 64  Q
    ||||||| |||||| ||||||||||||  |  |||||||||||||||||||||||| |||||||    
T  15930527 tataaaacgaagacttcaagacctaattgagaattcaagccgtcattctaaaaagtatagcttt 15930590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 25965141 - 25965055
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    |||||||||||||| |||||||||| || ||||  | |||||||||||||||||||||  ||||||||| | | ||||||||||||||    
T  25965141 attcaagccgtcatactaaaaagtt-agatttttagggtttgagtcttcatgtgttctgctcttgtatcgtttgtgatgcaagtttag 25965055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 33666271 - 33666188
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgt 85  Q
    |||| ||||||||| ||||||||||||    |||||||||| ||||||||||| |||||| ||||  | ||||||||||||||||    
T  33666271 tatataaggaagacttcaagacctaattgtttattcaagccatcattctaaaa-gtttagatttttagggtttgagtcttcatgt 33666188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 28623875 - 28623754
Alignment:
Q  130 tgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaag-taaggttgtag 228  Q
    ||||||||||||||||||| | | ||||| | ||| |||||||| | ||| ||||||||| ||||| |||||| ||||||||  ||||  || || ||||    
T  28623875 tgtgagcctttcttgtatcatct-tgatacaagttaaggactgtttattgagttgtaaactcttgtatgctacaccaaagcttgtaagcaaatgtcgtag 28623777  T
Q  229 ttgtctgtttgaaggtaacttca 251  Q
    |  | ||||||||||||||||||    
T  28623776 tgttttgtttgaaggtaacttca 28623754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 13195773 - 13195720
Alignment:
Q  32 tattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgt 85  Q
    |||||||||||| || ||||||||||||| ||||  | ||||||||||||||||    
T  13195773 tattcaagccgttatactaaaaagtttagatttttagggtttgagtcttcatgt 13195720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19171896 - 19171795
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| |||||||||  |||||||||||  |  |||||||||||||| |||||||||||||  ||||| |  |||||||||| |||| ||||  |||||||    
T  19171896 tatataaggaagactccaagacctaattgatcattcaagccgtcatactaaaaagtttagatttttagggttttgagtctttatgtattctgctcttgta 19171797  T
Q  100 tc 101  Q
    ||    
T  19171796 tc 19171795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19894349 - 19894432
Alignment:
Q  1 tataaaaggaagacatcaagacctaa-tgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgt 85  Q
    |||| ||||||||| ||||||||||| ||| | |||||||| |||||||| |||||||||| ||||  | ||||||||||||||||    
T  19894349 tatataaggaagacttcaagacctaattgttc-attcaagctgtcattct-aaaagtttagatttttagggtttgagtcttcatgt 19894432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 171
Target Start/End: Original strand, 20989477 - 20989612
Alignment:
Q  35 tcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattgt 132  Q
    |||||| ||||| ||||||||||||| ||||  | |||| ||||||| ||||  |||| |||||||||   | |||||||||| ||| |||||||   ||    
T  20989477 tcaagctgtcatactaaaaagtttagatttttagggttttgagtctttatgtcctctaatcttgtatcggttgtgatgcaagtctagaacctttt---gt 20989573  T
Q  133 gagcctttcttgtatcgtttgtgataaatgtttaggact 171  Q
    ||||||||||| ||||||  ||||||  |||||||||||    
T  20989574 gagcctttcttatatcgtccgtgatacttgtttaggact 20989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 24092437 - 24092187
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| |||| |||| |||| |||||||  | ||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| |||  |||||||    
T  24092437 tatataagggagacttcaacacctaattgagtattcaagccgtcattctaaaaagtttagattttaggggtttgagtctacatgtgtgctaggcttgtat 24092338  T
Q  101 catgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgct 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||| |||| || ||    
T  24092337 catgttgatgcaggtttagtaccttttattgtgagcctttcttgtatcgtttttgatacatgtttaggattgtgtgttgagttgtaaactcttgagtact 24092238  T
Q  201 acgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    || ||||||||  |||| |||||  ||||||| ||||||||||||||||||    
T  24092237 acaccaaagcttgtaagcaaggtgctagttgtttgtttgaaggtaacttca 24092187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 33977527 - 33977259
Alignment:
Q  11 agacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgtatcatgttgat 109  Q
    |||| ||||||||||||  |||||||||||||||||||||||| |||||| |||| | |  ||||||||| |||||| |||| |||||||||||||||||    
T  33977527 agacttcaagacctaatcaactattcaagccgtcattctaaaa-gtttagatttttaaggttttgagtctacatgtgctctactcttgtatcatgttgat 33977429  T
Q  110 gcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaag 209  Q
     ||||||||| | |||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||  | || ||||||| |||| ||||||    
T  33977428 tcaagtttagaatcttt-attgtgagcctttctcgtatcgtctgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgtactacaccaaag 33977330  T
Q  210 ctgttaagtaaggttgtagttg-tctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatag 277  Q
    ||  |||| |||||  || ||| | ||||||||||||||||||||  || |||||||||| ||||||||||    
T  33977329 cttgtaagcaaggtgttacttgttgtgtttgaaggtaacttcatccttgagtttgtgtttaagtctgatag 33977259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 33962208 - 33961932
Alignment:
Q  11 agacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgtatcatgttgat 109  Q
    |||| ||||||||||||| |||||||||||||||||||||||| |||||| |||| | || ||||||||| |||||| |||| ||||||||| || ||||    
T  33962208 agacttcaagacctaatgaactattcaagccgtcattctaaaa-gtttagatttttaagattttgagtctacatgtgctctactcttgtatcctgctgat 33962110  T
Q  110 gcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaag 209  Q
    |||||||||| |||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||  | ||  |||||| |||| |||||     
T  33962109 gcaagtttagaaccttt-attgtgagcctttctcgtatcgtctgtgatacatgtttaggactgtgtgttgagtttgatacttttgtgtactacaccaaac 33962011  T
Q  210 ctgttaagtaaggttgtagttg-tctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatagatcacagg 285  Q
    ||  |||| |||||  |||||| | ||||| ||| ||||||||||  || ||||||| ||  ||||||||| |||||||    
T  33962010 cttgtaagcaaggtgttagttgttgtgtttaaagataacttcatccttgagtttgtgcttaggtctgataggtcacagg 33961932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 27925131 - 27925307
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagctttt-acgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  |||||||| | ||| |||||||| |||| |||| | || ||||||||| |||||||||||||||| ||    
T  27925131 tatataagggagacttcaagacctaattgatcattcaagctggcatactaaaaaggttagatttttaggattttgagtctacatgtgttctattctttta 27925230  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtg 176  Q
    |||| | |||||||||||||| |||| | ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  27925231 tcatttgtgatgcaagtttagaacctat-attgtgatcctttcttgtatcgtttgtgatacttgtttaggactgtgtg 27925307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 45136591 - 45136418
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| ||||||||||||  | ||||||||||||||| ||||||||| |||  ||||| |  |||||||||| ||| | ||||||||||||    
T  45136591 tatataaggaagacttcaagacctaattgattattcaagccgtcatactaaaaagtatagatttttagggttttgagtctttatgagctctattcttgta 45136492  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtg 176  Q
    || | | |||||||||| ||| |||   |||||||  || ||||||||||||||||||||  ||||||||||||||||    
T  45136491 tcgtttgtgatgcaagtctagaacc---tattgtgttcc-ttcttgtatcgtttgtgatacttgtttaggactgtgtg 45136418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 22485612 - 22485493
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||||||||||| ||||||||||||| ||||  | |||||||||||||||| ||||  |||||||    
T  22485612 tatataaggaagacttcaagacctaattgttc-attcaagccgtcatactaaaaagtttagattttttgggtttgagtcttcatgtattctgctcttgta 22485514  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    |||| | ||||||||||||||    
T  22485513 tcatttgtgatgcaagtttag 22485493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 25240840 - 25240694
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||| ||||||||||||||||||| |  ||| | |||   ||||||||| ||||||||    
T  25240840 tatagaaggaagacttcaagacctaattaggtattcaagccgtcatactaaaaagtttagcttttagggttttaactct--gtgtgttctactcttgtat 25240743  T
Q  101 catgttgatgcaagtttagtac-ctttta-ttgtgagcctttcttgtatc 148  Q
    | | ||||| |||||||||| |  ||||| ||||||||||||||||||||    
T  25240742 cgt-ttgatacaagtttagtcctgttttatttgtgagcctttcttgtatc 25240694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 13660122 - 13660224
Alignment:
Q  71 tttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttagga 169  Q
    ||||||||| |||||| |||||||||||||| | | |||||||||||||| ||| ||||||||||  |||||||||||| | |||||||  ||||||| |    
T  13660122 tttgagtctacatgtgctctattcttgtatcgtttgtgatgcaagtttagaacc-tttattgtgatactttcttgtatcatatgtgatacttgtttagaa 13660220  T
Q  170 ctgt 173  Q
    ||||    
T  13660221 ctgt 13660224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 13718765 - 13718867
Alignment:
Q  71 tttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttagga 169  Q
    ||||||||| |||||| |||||||||||||| | | |||||||||||||| ||| ||||||||||  |||||||||||| | |||||||  ||||||| |    
T  13718765 tttgagtctacatgtgctctattcttgtatcgtttgtgatgcaagtttagaacc-tttattgtgatactttcttgtatcatatgtgatacttgtttagaa 13718863  T
Q  170 ctgt 173  Q
    ||||    
T  13718864 ctgt 13718867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 23541118 - 23541263
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtaccttttattg 131  Q
    ||||||| |||||| ||||||||||||| ||||  | |||| ||||||| |||| ||||  |||| |||||||||||||||||||||| | | |||| ||    
T  23541118 attcaagtcgtcatactaaaaagtttagatttttagggttttgagtctttatgtattctgctcttttatcatgttgatgcaagtttagaatc-tttactg 23541216  T
Q  132 tg-agcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||     |||||||||||||||||||||  ||||||||| |||||||    
T  23541217 tgtcttatttcttgtatcgtttgtgatacttgtttaggattgtgtgt 23541263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 9996875 - 9996790
Alignment:
Q  104 gttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaac 189  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||| | | ||||| ||| | |||||| | ||||| |||||||||    
T  9996875 gttgatgcaagtttagtcctgttttattgtgagcctttcttgtatcatct-tgatacatgctaaggactatttgttgagttgtaaac 9996790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 26536756 - 26536714
Alignment:
Q  11 agacatcaagacctaatgtactattcaagccgtcattctaaaa 53  Q
    |||| ||||||||||||| |||||||||| |||||||||||||    
T  26536756 agacttcaagacctaatgaactattcaagtcgtcattctaaaa 26536714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 21530861 - 21530611
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||||||||||||| ||||||||||||  | ||||||||| ||||||||||||||||||| ||||| |  ||||||| ||  ||||||||| ||||||||    
T  21530861 tataaaaggaagacttcaagacctaattgaatattcaagctgtcattctaaaaagtttagtttttagggttttgagtttttgtgtgttctactcttgtat 21530762  T
Q  101 catgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
      |||||||||| ||||||| |  |||||||||||||||||||||||||  || ||||| ||||| |||| ||||||||| ||||||||| |||||||||    
T  21530761 tgtgttgatgcaggtttagtcctgttttattgtgagcctttcttgtatcagtt-tgatacatgttaaggaatgtgtgttgagttgtaaactcttgtgtgc 21530663  T
Q  200 tacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    |||||||||||| ||||| ||| |||||||||  ||||||||||||||||||    
T  21530662 tacgccaaagcttttaagcaagattgtagttggttgtttgaaggtaacttca 21530611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 19445080 - 19444812
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgt-tctattcttgta 99  Q
    |||||||||||||| ||||||||||||   |||||| ||||||||||||||||||||||| ||||| |  ||||||||||  ||| | |||| |||||||    
T  19445080 tataaaaggaagacttcaagacctaattatctattctagccgtcattctaaaaagtttagtttttagggttttgagtcttt-tgtatgtctactcttgta 19444982  T
Q  100 tcatgttgatgcaagtttagtacc-ttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || ||||||||||||||||||||  ||||||||||||||||||||||||| | | ||||| ||| | |||||||| ||||| ||||||||| ||||| ||    
T  19444981 tcgtgttgatgcaagtttagtactgttttattgtgagcctttcttgtatcatct-tgatacatgctaaggactgtttgttgagttgtaaactcttgtatg 19444883  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc-tgtgtttgtgtttta 268  Q
    |||| || |||||  |||| ||||| |||||||| |||||||||||||||||||| | |||||||||||||    
T  19444882 ctacaccgaagcttgtaagcaaggtcgtagttgtttgtttgaaggtaacttcatcttttgtttgtgtttta 19444812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 33 - 285
Target Start/End: Original strand, 19466236 - 19466489
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgt-tctattcttgtatcatgttgatgcaagtttagtacc--ttttat 129  Q
    |||||||||||||||||||||||| ||||||||| |  |||||||  | |||||| ||||  |||||||||  |||||| | |||||||||   ||||||    
T  19466236 attcaagccgtcattctaaaaagtctagcttttagggttttgagttgt-atgtgtgtctacacttgtatcaccttgatgtaggtttagtactgtttttat 19466334  T
Q  130 tgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagt 229  Q
    |||||||||||||||||||  || ||||| ||||| |||| ||||||||| ||||||| ||||||||||||||||| ||| | || || ||| |||||||    
T  19466335 tgtgagcctttcttgtatctctt-tgatacatgttaaggattgtgtgttgagttgtaa-cacttgtgtgctacgcctaagtttttgagcaagattgtagt 19466432  T
Q  230 tgtctgtttgaaggtaacttcatc--tgtgtttgtgttttagtctgatagatcacagg 285  Q
    ||| ||||||||||||||||||||  ||| ||||||||| ||||||||| ||||||||    
T  19466433 tgtttgtttgaaggtaacttcatcattgtttttgtgtttaagtctgata-atcacagg 19466489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 15328805 - 15328653
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattca----agccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgt-tctattct 95  Q
    |||||||||||||||||||||||||||  | ||||||    | ||||||||||||||||||||| ||||| |  ||||||||||  ||||| |||| |||    
T  15328805 tataaaaggaagacatcaagacctaattgattattcattcaacccgtcattctaaaaagtttagtttttagggttttgagtctt-ttgtgtgtctactct 15328707  T
Q  96 tgtatcatgttgatgcaagtttagta-ccttttattgtgagcctttcttgtatc 148  Q
    |||||| |||||||||||||||||||   ||| |||||||||||||||||||||    
T  15328706 tgtatcgtgttgatgcaagtttagtattgtttgattgtgagcctttcttgtatc 15328653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 24789840 - 24789958
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||| ||||| |||||||||||| || | ||||||||||||||||||||| |||||| ||||  | |||||||||||| ||| ||||| |||||||    
T  24789840 tatataagtaagacttcaagacctaattgttc-attcaagccgtcattctaaaa-gtttagatttttagggtttgagtcttcgtgtattctactcttgta 24789937  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  24789938 tcgtttgtgatgcaagtttag 24789958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 12910971 - 12910853
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||  ||||||||||||    |||||||||||||||| ||||| |||||| ||||  | |||||||||||||||| ||||  ||||||||    
T  12910971 tatataaggaagatttcaagacctaattgtttattcaagccgtcattataaaa-gtttagatttttagggtttgagtcttcatgtattctgctcttgtat 12910873  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  12910872 cgtttgtgatgcaagtttag 12910853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 23759070 - 23758985
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    |||||||||||||||||||||   |||| ||||  | |||||||||||||||| ||||  ||||||||| | | ||||||||||||||    
T  23759070 attcaagccgtcattctaaaa--gttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtttgtgatgcaagtttag 23758985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 15700030 - 15700169
Alignment:
Q  16 tcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagt 115  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||||||| |  ||||||||| |||||||||||||||||||||||||||||||||||    
T  15700030 tcaagacctaatgaaccattcaatctgtcattctaaaaagtttagcttttagggttttgagtctacatgtgttctattcttgtatcatgttgatgcaagt 15700129  T
Q  116 ttagtaccttttattgtgagcctttcttgtatcgtttgtga 156  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  15700130 ttagtacc-cttattgtgagcctttcttgtatcgtttgtga 15700169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 19183367 - 19183639
Alignment:
Q  5 aaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatg 104  Q
    |||||||||||||||||||||||  |  ||||||| |||||||||||||||||||| || || |  |||| |||||  ||||||||||||||||||| ||    
T  19183367 aaaggaagacatcaagacctaattgatcattcaagacgtcattctaaaaagtttagtttgtagggttttgtgtctttgtgtgttctattcttgtatcgtg 19183466  T
Q  105 ttgatgcaagtttagtac-cttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacg 203  Q
    |||||||||||||||| |  ||||||||||||||||||||||||| | | ||||| ||| | |||||||| ||||| ||||||||| | | ||||||||     
T  19183467 ttgatgcaagtttagttctgttttattgtgagcctttcttgtatcatct-tgatacatgctaaggactgtttgttgagttgtaaactcgt-tgtgctaca 19183564  T
Q  204 ccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttcatc-tgtgtttgtg-ttttagtctgata 276  Q
     | || ||  |||| ||||| |||||||| |||||||||||||||||| | | |||||||| |||||||||||||    
T  19183565 tcgaatcttgtaagcaaggtcgtagttgtttgtttgaaggtaacttcaccatttgtttgtgtttttagtctgata 19183639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 19659917 - 19659667
Alignment:
Q  2 ataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatc 101  Q
    ||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||| ||||| |  ||||||||||  ||||||||| ||||||||     
T  19659917 ataaaaggaagacttcaagacctaattatgtattcaagccgtcattctaaaaagtttagtttttagggttttgagtctttgtgtgttctactcttgtatt 19659818  T
Q  102 atgttgatgcaagtttagtac-ctttta-ttgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgc 199  Q
     |||||||||||||||||| |  ||||| ||||||||||||||| |||| | | || || ||| | ||||||||||||||| |||||||| | | |||||    
T  19659817 gtgttgatgcaagtttagtcctgttttatttgtgagcctttcttatatcatct-tggtacatggtaaggactgtgtgttggattgtaaactcat-tgtgc 19659720  T
Q  200 tacgccaaagctgttaagtaaggttgtagttg--tctgtttgaaggtaacttc 250  Q
    ||| |||||||| | ||| |||||||||||||  | |||||||||||||||||    
T  19659719 tacaccaaagctttgaagcaaggttgtagttgtttgtgtttgaaggtaacttc 19659667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 15162164 - 15162454
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttga-gtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  | |||||||||| |||||||||||||||||| ||||  |||||| | |||| |||||| |||| |||||||    
T  15162164 tatataagggagacttcaagacctaattgattattcaagccatcattctaaaaagtttagatttttagagttttaagtctacatgtgctctactcttgta 15162263  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || | | |||||||||||||| |||||| | ||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||  | || |||||||     
T  15162264 tcgtttatgatgcaagtttagaaccttt-agtgtgatcctttcttgtatcgtttgtgatacatgcttaggactgtgtgttgagtttgatactcttgtgta 15162362  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttg-tctgtttgaaggtaacttca---tctgtgtttgtgtttta-gtctgatagatcacagg 285  Q
    |||| || ||| ||| ||  |||||  |||||| | ||||||||||||||||||   | ||||||||||||| | ||||||||| |||||||    
T  15162363 ctacaccgaagttgtgaaacaaggtgctagttgttttgtttgaaggtaacttcaacttttgtgtttgtgtttgaggtctgataggtcacagg 15162454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 15622916 - 15622666
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcatt-ctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||||||||| ||| ||||||||||||  | ||||||||||||| || ||||||||||||| ||||| |  ||||||||||  ||||| ||| |||||||    
T  15622916 tataaaaggaggacttcaagacctaattgattattcaagccgtcgtttctaaaaagtttag-ttttagggttttgagtctttgtgtgt-ctactcttgta 15622819  T
Q  100 tcatgttgatgcaagtttagta----ccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgt 195  Q
    || |||||||||||||||||||       ||||||||||||||| |||||||| ||  ||||| ||||| |||||||| ||||  ||||| ||| | | |    
T  15622818 tcgtgttgatgcaagtttagtattgtttgtttattgtgagccttgcttgtatc-ttcttgatacatgttaaggactgtttgtttagttgt-aactcat-t 15622722  T
Q  196 gtgctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca 251  Q
    ||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  15622721 gtgctacaccaaagcttttaagcaaggttgtagttgtttgtttgaaggtaacttca 15622666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 10724741 - 10724562
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  ||| ||||||||||||| |||||| ||| ||||  | |||| |||||| |||||| |||| |||||||    
T  10724741 tatataagggagacttcaagacctaattgatcatttaagccgtcattctgaaaagtgtagatttttagggttttgagtctacatgtgctctactcttgta 10724642  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttg 179  Q
    || | | |||||||||||||| |||||| || |||||||||||||| ||| ||||||||| || |||||||||||||||||    
T  10724641 tcgtttgtgatgcaagtttaggaccttt-atagtgagcctttcttgcatcatttgtgatacatatttaggactgtgtgttg 10724562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 10938510 - 10938331
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  ||| ||||||||||||| |||||| ||| ||||  | |||| |||||| |||||| |||| |||||||    
T  10938510 tatataagggagacttcaagacctaattgatcatttaagccgtcattctgaaaagtgtagatttttagggttttgagtctacatgtgctctactcttgta 10938411  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttg 179  Q
    || | | |||||||||||||| |||||| || |||||||||||||| ||| ||||||||| || |||||||||||||||||    
T  10938410 tcgtttgtgatgcaagtttaggaccttt-atagtgagcctttcttgcatcatttgtgatacatatttaggactgtgtgttg 10938331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 189
Target Start/End: Complemental strand, 9069389 - 9069236
Alignment:
Q  37 aagccgtcattctaaaaag-tttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttagtac-cttttattgtga 134  Q
    |||||||||  |||||||| ||||| ||||| |  ||||||||||  || |||||| ||||||||| |||||||||||||||||| |  |||||||||||    
T  9069389 aagccgtcaaactaaaaaggtttagtttttagggttttgagtctttgtgcgttctactcttgtatcgtgttgatgcaagtttagtcctgttttattgtga 9069290  T
Q  135 gcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaac 189  Q
    |||||||||||||| | | ||||| ||| | || ||||| ||||| |||||||||    
T  9069289 gcctttcttgtatcatct-tgatacatgctaagaactgtttgttgagttgtaaac 9069236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 10191365 - 10191192
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | ||||||||||||||||||||| |||||| ||||  | |||||||||||||||| ||||  |||||||    
T  10191365 tatataaggaagacttcaagacctaat-tattcattcaagccgtcattctaaaa-gtttagatttttagggtttgagtcttcatgtattctgctcttgta 10191268  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    || | | |||||||||||||| |   | ||||||| |  |||||||||||||| |||||||  || ||||||||||||||    
T  10191267 tcgtttgtgatgcaagtttagaa---tctattgtgtgttctttcttgtatcgtctgtgatacttg-ttaggactgtgtgt 10191192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 33746366 - 33746249
Alignment:
Q  33 attcaagccgtcattctaaaaag-tttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttag-taccttttatt 130  Q
    |||||||||||||  |||||||| ||||| ||||| |  ||||||||||  ||||||||  ||||||||  ||||||||||||||||| |   |||||||    
T  33746366 attcaagccgtcaaactaaaaaggtttagtttttaaggttttgagtctttgtgtgttctcctcttgtattgtgttgatgcaagtttagctctgttttatt 33746267  T
Q  131 gtgagcctttcttgtatc 148  Q
    ||||||||||||||||||    
T  33746266 gtgagcctttcttgtatc 33746249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 28019781 - 28019664
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||    ||||||||||||||||||||||   |||| ||||  | |||||||||||||||| ||||  |||||| |    
T  28019781 tatataaggaagacttcaagacctaattgtttattcaagccgtcattctaaaa--gttagatttttagggtttgagtcttcatgtattctgctcttgtct 28019684  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  28019683 cgtttgtgatgcaagtttag 28019664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 16384354 - 16384196
Alignment:
Q  16 tcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaag 114  Q
    ||||||||||||  | |||||||||| ||||||| |||||||||| ||||  | |||| | ||||||||| ||||  ||||||||| | | |||||||||    
T  16384354 tcaagacctaattgattattcaagccatcattct-aaaagtttagatttttagggtttaactcttcatgtattctgctcttgtatcgtttgtgatgcaag 16384256  T
Q  115 tttagtaccttttattgtgag-cctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||||| |   | ||||||| |  |||||||||||||| |||||||  || ||||||||||||||    
T  16384255 tttagaa---tctattgtgtgttctttcttgtatcgtctgtgatacttg-ttaggactgtgtgt 16384196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 18601372 - 18601457
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttag 119  Q
    |||||||||||||||||||||   |||| ||||  | |||||||||||||||| ||||  ||||||||| | | ||||||||||||||    
T  18601372 attcaagccgtcattctaaaa--gttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtttgtgatgcaagtttag 18601457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 7218 - 7506
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  |||||||||| |||||||| |||||||| ||||  | |||| |||||| |||||| |||| |||||||    
T  7218 tatataagggagacttcaagacctaattgatcattcaagccgccattctaataagtttagatttttagggttttgagtctacatgtgctctactcttgta 7317  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtg 198  Q
    || | | |||||||||||||| |||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||  | || |||||||     
T  7318 tcgtttgtgatgcaagtttagaacctat-attgtgagcctttcttgtatcgtctgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgta 7416  T
Q  199 ctacgccaaagctgttaagtaaggttgtagttgtctgtttgaaggtaacttca---tctgtgtttgtgttttagtctgatagatcacagg 285  Q
    |||| || ||| ||||||  |||||  ||||||| ||||||||||||||||||   | || ||||||||||  ||||||||| |||||||    
T  7417 ctacaccgaagttgttaaacaaggtgttagttgtttgtttgaaggtaacttcaacttttgagtttgtgtttaggtctgataggtcacagg 7506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 17837 - 18056
Alignment:
Q  33 attcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    ||||||| |||||||||||||||||||| |||||| |  ||||||||| |||||| |||| ||||||||| | | |||||||||||||| |||| | |||    
T  17837 attcaagtcgtcattctaaaaagtttagacttttagggttttgagtctacatgtgctctactcttgtatcgtttgtgatgcaagtttagaacctat-att 17935  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagtt 230  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||| |||  | || ||||||| |||| || ||| ||| ||  |||||  |||||    
T  17936 gtgagcctttcttgtatcgtccgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgtactacaccgaagttgtgaaacaaggtgttagtt 18035  T
Q  231 gtctgtttgaaggtaacttca 251  Q
    || ||||||||||||||||||    
T  18036 gtttgtttgaaggtaacttca 18056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 27231 - 27450
Alignment:
Q  33 attcaagccgtcattctaaaaagtttag-cttttacgagtttgagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    ||||||| |||||||||||||||||||| |||||| |  ||||||||| |||||| |||| ||||||||| | | |||||||||||||| |||| | |||    
T  27231 attcaagtcgtcattctaaaaagtttagacttttagggttttgagtctacatgtgctctactcttgtatcgtttgtgatgcaagtttagaacctat-att 27329  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttgggttgtaaacacttgtgtgctacgccaaagctgttaagtaaggttgtagtt 230  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||| |||  | || ||||||| |||| || ||| ||| ||  |||||  |||||    
T  27330 gtgagcctttcttgtatcgtccgtgatacatgtttaggactgtgtgttgagtttgatactcttgtgtactacaccgaagttgtgaaacaaggtgttagtt 27429  T
Q  231 gtctgtttgaaggtaacttca 251  Q
    || ||||||||||||||||||    
T  27430 gtttgtttgaaggtaacttca 27450  T

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Target: scaffold0069 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 6387 - 6211
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgt 98  Q
    |||||||  ||||| |||||||||||| | || ||| |||||||||| ||||||| ||||| ||||  | |||| |||||| ||||| |||| |||||||    
T  6387 tataaaaacaagacttcaagacctaat-tgctcatttaagccgtcatactaaaaaatttagatttttagggttttgagtctacatgtattctgttcttgt 6289  T
Q  99 atcatgttgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgt 177  Q
    ||||||||||||||||||||| | | |||| |||| ||||| |||||||||  |||||||  |||||||||||||||||    
T  6288 atcatgttgatgcaagtttagaatc-tttactgtgtgccttacttgtatcgcctgtgatacttgtttaggactgtgtgt 6211  T

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Target: scaffold0213 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8260 - 8439
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagttt-agcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| |||| |||| ||||||||||||  |  |||||||||| |||||||| | ||||  | ||||| |  ||||||||| |||||| |||| |||| ||    
T  8260 tatataagggagacttcaagacctaattgatcattcaagccgacattctaagaggtttgggtttttagggttttgagtctacatgtgctctactctttta 8359  T
Q  100 tcatgt-tgatgcaagtttagtaccttttattgtgagcctttcttgtatcgtttgtgataaatgtttaggactgtgtgttg 179  Q
    |||| | |||||||||||||| ||| ||||||| |||||||||| ||||||| ||||||| |||||||||||||| |||||    
T  8360 tcatttgtgatgcaagtttagaacc-tttattgagagcctttctcgtatcgtctgtgatacatgtttaggactgtatgttg 8439  T

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Target: scaffold0185 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 2048 - 2166
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtat 100  Q
    |||| ||||||||| ||||||||||||  | |||||||||||||||||| |||||||||| ||||    |||||||||||||||| ||||  ||||||||    
T  2048 tatataaggaagacttcaagacctaattgattattcaagccgtcattct-aaaagtttagattttcaaggtttgagtcttcatgtattctgctcttgtat 2146  T
Q  101 catgt-tgatgcaagtttag 119  Q
    | | | ||||||||||||||    
T  2147 cgtttgtgatgcaagtttag 2166  T

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Target: scaffold0190 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 16332 - 16467
Alignment:
Q  33 attcaagccgtcattctaaaaagtttagcttttacgagttt-gagtcttcatgtgttctattcttgtatcatgt-tgatgcaagtttagtaccttttatt 130  Q
    ||||||||||||||  |||||||||||| ||||  | |||| || | | |||||| |||||||||||||| | | |||||| ||||||| |||||||       
T  16332 attcaagccgtcatattaaaaagtttagatttttagggttttgaatttacatgtgctctattcttgtatcgtttgtgatgcgagtttagaacctttt--- 16428  T
Q  131 gtgagcctttcttgtatcgtttgtgataaatgtttagga 169  Q
    |||| |||||||||||||||||||||||  |||||||||    
T  16429 gtgatcctttcttgtatcgtttgtgatacttgtttagga 16467  T

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Target: scaffold1001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 393 - 294
Alignment:
Q  50 aaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatgttgatgcaagtttag-taccttttattgtgagcctttcttgtatc 148  Q
    |||| |||||| ||||| |  ||||||||||  ||| ||||| ||||||||| ||||||||||| ||||| | | |||||||||||||||| ||||||||    
T  393 aaaaggtttagtttttagggttttgagtctttgtgtcttctactcttgtatcgtgttgatgcaattttagtttcgttttattgtgagccttacttgtatc 294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 37065 - 36952
Alignment:
Q  6 aaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgtatcatg 104  Q
    ||||||||| |||||||||||| || | |||||||| |||||||||||| |||||| ||||  | |||||||||||||||| ||||  ||||||||| |     
T  37065 aaggaagacttcaagacctaattgttc-attcaagctgtcattctaaaa-gtttagatttttagggtttgagtcttcatgtattctgctcttgtatcgtt 36968  T
Q  105 t-tgatgcaagtttag 119  Q
    | ||||||||||||||    
T  36967 tgtgatgcaagtttag 36952  T

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Target: scaffold0359 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2398 - 2299
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | ||||||||||||||||| |||||||||| ||||  | |||| ||||||||||| ||||  |||||||    
T  2398 tatataaggaagacttcaagacctaattgttc-attcaagccgtcattct-aaaagtttagatttttagggtttaagtcttcatgtattctgctcttgta 2301  T

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Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25358 - 25458
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | ||||||| |||||| |||||||| |||| ||||  | |||||||||||||||| ||||| || ||||    
T  25358 tatataaggaagacttcaagacctaattgttc-attcaagtcgtcatactaaaaaggttagatttttagggtttgagtcttcatgtattctactcgtgta 25456  T
Q  100 tc 101  Q
    ||    
T  25457 tc 25458  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 12191 - 12309
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtact-attcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| | || ||||||| ||||| ||||||| |||||| ||||  | |||||||||||||||| ||||  |||||||    
T  12191 tatataaggaagacttcaagacctaat-tgctcattcaagtcgtcactctaaaa-gtttagatttttagggtttgagtcttcatgtattctgctcttgta 12288  T
Q  100 tcatgt-tgatgcaagtttag 119  Q
    || | | ||||||||||||||    
T  12289 tcgtttgtgatgcaagtttag 12309  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 109940 - 110039
Alignment:
Q  1 tataaaaggaagacatcaagacctaat-gtactattcaagccgtcattctaaaaagtttagcttttacgagtttgagtcttcatgtgttctattcttgta 99  Q
    |||| ||||||||| |||||||||||| || | |||||| |||||||||||||| |||||| || |  | |||||||||||||||| |||| || |||||    
T  109940 tatataaggaagacttcaagacctaattgttc-attcaaaccgtcattctaaaa-gtttagattattagggtttgagtcttcatgtattctgtttttgta 110037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 356976 - 357028
Alignment:
Q  1 tataaaaggaagacatcaagacctaatgtactattcaagccgtcattctaaaa 53  Q
    |||| ||||||||| |||| |||||||  | ||||||||||||||||||||||    
T  356976 tatataaggaagacttcaaaacctaattgattattcaagccgtcattctaaaa 357028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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