View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15505_low_6 (Length: 238)
Name: NF15505_low_6
Description: NF15505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15505_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 33506989 - 33507209
Alignment:
| Q |
4 |
gtgcatcgttaatgagaatctctccaaacctagaaagagagaaaaaccacatagattatgcaacgattaacatttaagccagaaacattttctagaatct |
103 |
Q |
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| T |
33506989 |
gtgcatcgttaatgagaatctctccaaacctagaaagagagaaaaaccacatagattatgcaacgattaacatttaatccagaaacattttctagaatct |
33507088 |
T |
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| Q |
104 |
aacatccaaataccaattagcacttgcatattatgattaggattgttatcagtatcaatcgcctcatcctaaatta---caaattaaaactgttgaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
33507089 |
aacatccaaataccaattagcacttgcatattatgattaggattgttatcagtatcaatcgcctcatcctaaattataccaaattaaaactgttgaaaca |
33507188 |
T |
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| Q |
201 |
aacaacatgataggtgcttcg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
33507189 |
aacaacatgataggtgcttcg |
33507209 |
T |
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