View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15506_low_4 (Length: 385)

Name: NF15506_low_4
Description: NF15506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15506_low_4
NF15506_low_4
[»] chr1 (7 HSPs)
chr1 (16-336)||(6397672-6397992)
chr1 (16-189)||(7440802-7440976)
chr1 (79-170)||(30848930-30849021)
chr1 (336-382)||(6398012-6398058)
chr1 (79-187)||(37259035-37259144)
chr1 (189-229)||(41941005-41941045)
chr1 (188-230)||(30848829-30848871)
[»] chr8 (5 HSPs)
chr8 (39-164)||(14958008-14958136)
chr8 (83-189)||(4490302-4490408)
chr8 (16-123)||(15292573-15292680)
chr8 (16-123)||(15472942-15473049)
chr8 (101-173)||(34697261-34697333)
[»] chr5 (4 HSPs)
chr5 (16-164)||(41715037-41715186)
chr5 (90-187)||(19276899-19276996)
chr5 (16-156)||(7237082-7237225)
chr5 (79-170)||(19340568-19340659)
[»] chr6 (5 HSPs)
chr6 (101-164)||(9627226-9627291)
chr6 (57-156)||(1415511-1415613)
chr6 (188-226)||(9405126-9405164)
chr6 (188-225)||(14286319-14286356)
chr6 (16-155)||(33908593-33908728)
[»] chr3 (4 HSPs)
chr3 (39-113)||(8543076-8543151)
chr3 (76-130)||(29794616-29794670)
chr3 (76-124)||(8541042-8541090)
chr3 (291-336)||(17264433-17264477)
[»] scaffold0035 (1 HSPs)
scaffold0035 (16-162)||(24407-24555)
[»] chr4 (1 HSPs)
chr4 (81-164)||(3284176-3284259)
[»] chr7 (1 HSPs)
chr7 (188-230)||(18020207-18020249)
[»] chr2 (1 HSPs)
chr2 (101-170)||(31395255-31395323)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 6397672 - 6397992
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggccattgtgcctacctctgtgactgtagagcagctatagtttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6397672 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaacgcacttcggccattgtgcctacctctgtgactatagagcagctatagtttt 6397771  T
Q  116 gtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagtattattactatgattcagttgccttctttagtgtcttgcatatatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6397772 gtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatatagtattattactatgattcagttgccttctttagtgtcttgcatatatg 6397871  T
Q  216 agtcatacttcaacaattttaatcccttatattacaaatgttagaaaatttggttttaagnnnnnnncgtttcgttttagacagtttagtccttcctatc 315  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  6397872 agtcatacttcaacaattttgatcccttatattacaaatgttagaaaatttggttttaagtttttttcgtttcgttttagacagtttagtccttcctatc 6397971  T
Q  316 agggaccaaaatgtcttaata 336  Q
    |||||||||||||||||||||    
T  6397972 agggaccaaaatgtcttaata 6397992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 7440976 - 7440802
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| ||||||||| ||||   | |||| ||||||||||| ||| |||||||| || |   ||| |||| |||| |||||| | ||||||||    
T  7440976 aaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttcggccaattatatttacttctgcgactatagagcggttatagttt 7440877  T
Q  115 tgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagtattattactatgattcagtt 189  Q
    ||||| ||||| ||||||||| ||  ||||| ||||||||| |||||||| || ||||| |||||||||||||||    
T  7440876 tgtttttattattgtgatgaattagagtttcggtgttacaaacaatatatataatattactactatgattcagtt 7440802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 30849021 - 30848930
Alignment:
Q  79 gtgcctacctctgtgactgtagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagta 170  Q
    ||||||||||||| || | ||||||| ||||||| ||||||||  |||||||||||| || ||||| |||| ||||| |||||||| |||||    
T  30849021 gtgcctacctctgcgattatagagcaactatagtattgtttctgctactgtgatgaattagggtttaagtggtacaaacaatatatatagta 30848930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 6398012 - 6398058
Alignment:
Q  336 aattgcaataatgtttgtaacttaagggccaaaagtataatctaccc 382  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||    
T  6398012 aattgcaataatgtttgtaacttaagggccaaaagtgtaatttaccc 6398058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 37259144 - 37259035
Alignment:
Q  79 gtgcctacctctgtgactgtagagcagctatagttttgtttcta-ttactgtgatgaactaaggtttcagtgttacaagcaatatatctagtattattac 177  Q
    ||||||| ||||| ||||||||||||||||||| |  |||| || ||||| ||||||| |||||||||| | |||| | ||| |||| |||||  | |||    
T  37259144 gtgcctatctctgcgactgtagagcagctatagctcagtttgtatttactctgatgaattaaggtttcaattttaccaacaacatatatagtaccactac 37259045  T
Q  178 tatgattcag 187  Q
    ||||||||||    
T  37259044 tatgattcag 37259035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 41941045 - 41941005
Alignment:
Q  189 tgccttctttagtgtcttgcatatatgagtcatacttcaac 229  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  41941045 tgccttctttaatgtcttgtatatatgagtcatacttcaac 41941005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 30848871 - 30848829
Alignment:
Q  188 ttgccttctttagtgtcttgcatatatgagtcatacttcaaca 230  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||    
T  30848871 ttgccttctttagtgtcttgaatatatgagccatactttaaca 30848829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 14958136 - 14958008
Alignment:
Q  39 acaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttttgtttctattactgt--gatgaa 135  Q
    |||| |||||||  |||||||||||  || |||||||| ||||||||||||||| || | |||||||||||||||| |||||||||||||||  || |||    
T  14958136 acaatgaacataggatatttgttaacacagttcggccaattgtgcctacctctgcgattatagagcagctatagttatgtttctattactgtgagaagaa 14958037  T
Q  136 ctaaggtttcagtgttacaagcaatatat 164  Q
     || |||||||||||||||||||||||||    
T  14958036 ttagggtttcagtgttacaagcaatatat 14958008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 4490408 - 4490302
Alignment:
Q  83 ctacctctgtgactgtagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagtattattactatga 182  Q
    ||||||||| |||| |||||||| |||||| |||||| ||||| | ||||||| ||||||||||||||| || ||||||||| ||||| ||  | |||||    
T  4490408 ctacctctgcgactatagagcagttatagtcttgtttgtattattatgatgaattaaggtttcagtgttgcatgcaatatatatagtaatacaattatga 4490309  T
Q  183 ttcagtt 189  Q
    |||||||    
T  4490308 ttcagtt 4490302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 15292573 - 15292680
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| |||||||||   || ||||| || ||||| ||||| ||| |||| ||| ||||||||| ||||  |||| || |||| |||||||||    
T  15292573 aaataagagaacgaaagtaaaagttaatgaacacacgatatt-gttaacgcagttcgaccaattgtgcctatctctacgactataaagcaactatagttt 15292671  T
Q  115 tgtttctat 123  Q
    |||||||||    
T  15292672 tgtttctat 15292680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 15472942 - 15473049
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| |||||||||   || ||||| || ||||| ||||| ||| |||| ||| ||||||||| ||||  |||| || |||| |||||||||    
T  15472942 aaataagagaacgaaagtaaaagttaatgaacacacgatatt-gttaacgcagttcgaccaattgtgcctatctctacgactataaagcaactatagttt 15473040  T
Q  115 tgtttctat 123  Q
    |||||||||    
T  15473041 tgtttctat 15473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 34697333 - 34697261
Alignment:
Q  101 agcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagtatta 173  Q
    ||||||||| |||  |||||||||| |||| |||| || ||||| | ||||||||||||||||  ||||||||    
T  34697333 agcagctattgttaggtttctattattgtgttgaattacggttttattgttacaagcaatataaatagtatta 34697261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 41715186 - 41715037
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| ||||  ||| ||||  ||||||| || || ||||||||| ||||| || ||||||||||||||  |||  ||||||| ||||||||     
T  41715186 aaataagagaacgaaagagaaagacaattaacatacgatctt-gttaatgcagttcggacaattgtgcctacctctacgacgatagagcatctatagttc 41715088  T
Q  115 tgtttctattactgtgatga-actaaggtttcagtgttacaagcaatatat 164  Q
     ||||||||||||||||||| | || || ||||||||||||||||||||||    
T  41715087 cgtttctattactgtgatgagaataggggttcagtgttacaagcaatatat 41715037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 19276996 - 19276899
Alignment:
Q  90 tgtgactgtagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagtattattactatgattcag 187  Q
    ||||||| |||| || ||||||||| |||| ||||||||||||||  || ||||||| |||||| |||||||||| |||||  ||||||| |||||||    
T  19276996 tgtgactatagatcaactatagtttcgtttgtattactgtgatgatttagggtttcaatgttactagcaatatatatagtacaattactacgattcag 19276899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 7237082 - 7237225
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcc-attgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| |||| |||| |||| ||||| || ||||||||||  ||| ||||||| ||| || ||||||||| | || ||||||||||||| ||     
T  7237082 aaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttcggccaattttgtctacctctgcggctatagagcagctataattc 7237181  T
Q  115 tgtttctattactgtgat--gaactaaggtttcagtgttacaag 156  Q
      ||| ||||||||||||  ||| || |||||| ||||||||||    
T  7237182 catttttattactgtgataagaattagggtttcggtgttacaag 7237225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 19340659 - 19340568
Alignment:
Q  79 gtgcctacctctgtgactgtagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagta 170  Q
    |||| |||||||| |||| |||||||| ||||||||  ||| ||||  | ||||||| ||  |||| ||||||||||||||||||| |||||    
T  19340659 gtgcttacctctgcgactatagagcagatatagtttcatttttattgatatgatgaattagagtttaagtgttacaagcaatatatatagta 19340568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 9627226 - 9627291
Alignment:
Q  101 agcagctatagttttgtttctattactgtgat--gaactaaggtttcagtgttacaagcaatatat 164  Q
    ||||||||||||| ||||||||| ||||||||  ||| || |||||||||||||||||||||||||    
T  9627226 agcagctatagttctgtttctatcactgtgataagaattagggtttcagtgttacaagcaatatat 9627291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 1415613 - 1415511
Alignment:
Q  57 ttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttttgtttctattactgtgat--gaactaaggtttcagtgttac 153  Q
    ||||||| ||| |||||||| ||||| ||||||||  || | |||||||||||||||| ||||||||||| ||||||  ||| || ||||||| ||||||    
T  1415613 ttgttaacgcagttcggccaattgtggctacctctacgattatagagcagctatagttctgtttctattattgtgataagaattagggtttcaatgttac 1415514  T
Q  154 aag 156  Q
    |||    
T  1415513 aag 1415511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 9405164 - 9405126
Alignment:
Q  188 ttgccttctttagtgtcttgcatatatgagtcatacttc 226  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  9405164 ttgccttctttagtgtcttgtatatatgagccatacttc 9405126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 14286356 - 14286319
Alignment:
Q  188 ttgccttctttagtgtcttgcatatatgagtcatactt 225  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  14286356 ttgccctctttagtgtcttgtatatatgagtcatactt 14286319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 33908593 - 33908728
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| ||||  ||| |||| ||||| |  ||||||||||| ||| |||| ||| |||||||||||       || |||||| |||||||||     
T  33908593 aaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcctacc-------ctatagagctgctatagttc 33908685  T
Q  115 tgtttctattactgtgat--gaactaaggtttcagtgttacaa 155  Q
     |||||||||||||||||  ||| || ||||||||||||||||    
T  33908686 cgtttctattactgtgataggaattagggtttcagtgttacaa 33908728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 8543151 - 8543076
Alignment:
Q  39 acaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagtt 113  Q
    |||| |||||||| ||||||||||| ||| |||||||| ||||||||||||| |||||| |||| || ||||||||    
T  8543151 acaatgaacatacgatatttgttaacgcagttcggccaattgtgcctacctcggtgactatagaacaactatagtt 8543076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 29794616 - 29794670
Alignment:
Q  76 attgtgcctacctctgtgactgtagagcagctatagttttgtttctattactgtg 130  Q
    ||||||||||| | |  || |||||||||||||||||||||||||||||||||||    
T  29794616 attgtgcctacttatacgattgtagagcagctatagttttgtttctattactgtg 29794670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 8541090 - 8541042
Alignment:
Q  76 attgtgcctacctctgtgactgtagagcagctatagttttgtttctatt 124  Q
    |||||||||| |||||||||| |||| ||||||||||| ||||||||||    
T  8541090 attgtgcctatctctgtgactatagaacagctatagttctgtttctatt 8541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 17264433 - 17264477
Alignment:
Q  291 tttagacagtttagtccttcctatcagggaccaaaatgtcttaata 336  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||    
T  17264433 tttagacactttagtcctccctatcagg-accaaaatgtcttaata 17264477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 24555 - 24407
Alignment:
Q  16 aaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaatgcacttcggcca-ttgtgcctacctctgtgactgtagagcagctatagttt 114  Q
    |||||||||||| ||||||||| |||| ||| | || || || ||||| |   |||||||| || |||||||||||| |||| |||||||||| |||||     
T  24555 aaataagagaacaaaagtaaaagacaatgaaaacacgatctt-gttaaagttattcggccaattatgcctacctctgcgactatagagcagctgtagttc 24457  T
Q  115 tgtttctattactgtgatga-actaag-gtttcagtgttacaagcaatat 162  Q
     ||||||||||| ||||| | ||| || ||||| ||||||||||||||||    
T  24456 cgtttctattacagtgataagacttagagtttcggtgttacaagcaatat 24407  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 3284176 - 3284259
Alignment:
Q  81 gcctacctctgtgactgtagagcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatat 164  Q
    ||||| |||||||||| |||| ||  |||||||  |||| ||||||||||||||| || ||||| || ||||||||||| ||||    
T  3284176 gcctatctctgtgactatagaacaattatagttccgtttttattactgtgatgaattagggttttagcgttacaagcaaaatat 3284259  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 18020249 - 18020207
Alignment:
Q  188 ttgccttctttagtgtcttgcatatatgagtcatacttcaaca 230  Q
    |||||||||||||||||||||||||| ||| ||||||| ||||    
T  18020249 ttgccttctttagtgtcttgcatatacgagccatactttaaca 18020207  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 31395255 - 31395323
Alignment:
Q  101 agcagctatagttttgtttctattactgtgatgaactaaggtttcagtgttacaagcaatatatctagta 170  Q
    |||||||||| ||  |||| |||||||| |||||  || ||||||||||||||||||||||||| |||||    
T  31395255 agcagctataattccgtttatattactgcgatgat-tagggtttcagtgttacaagcaatatatatagta 31395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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