View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15506_low_6 (Length: 269)
Name: NF15506_low_6
Description: NF15506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15506_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 47180535 - 47180353
Alignment:
| Q |
1 |
tggtataagcataattagagtactcaatagaatgttctat----ttgacagagnnnnnnnnngtatatgaacattgatatgtgtacctaaattagaagca |
96 |
Q |
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| T |
47180535 |
tggtataagcataattagagtactcaatagaatgttctatatatttgacagagaaaaaaaaagtatatgaacattgatatgtgtacctaaattagaagca |
47180436 |
T |
|
| Q |
97 |
aataaggtaagaaaaattatgagaatcagagtaactgaagtttttagtctgctgtggtgtatttttggtgaatccatgagtgt |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47180435 |
aataaggtaagaaaaattatgagaatcagagtaactgaagtttttagtctgctgtggtgtatttttggtgaatccatgagtgt |
47180353 |
T |
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