View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15506_low_7 (Length: 237)

Name: NF15506_low_7
Description: NF15506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15506_low_7
NF15506_low_7
[»] chr7 (2 HSPs)
chr7 (1-200)||(31274327-31274526)
chr7 (1-56)||(5462815-5462871)
[»] chr4 (2 HSPs)
chr4 (3-93)||(46767836-46767926)
chr4 (1-92)||(52430963-52431055)
[»] chr8 (1 HSPs)
chr8 (3-54)||(43419955-43420006)
[»] chr2 (1 HSPs)
chr2 (9-92)||(43520951-43521035)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31274526 - 31274327
Alignment:
Q  1 tctattgttttggtttttatgtcaataattactttcttttgtaaatctataattgtgttataagttg-catgtaaatgattgttcaaataacaagcttca 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  31274526 tctattgttttagtttttatgtcaataattactttcttttgtaaatctataattgtgttataagttgccatgtaaatgattgttcaaataacacgcttca 31274427  T
Q  100 ttttaaaaggtctcagcaatagaaattgctttatacttttgtnnnnnnntgaaagtgcaaatatagctagacaataacgaaaatccacggaaaactagaa 199  Q
    |||||||||||||  |||||||||||| || |||||||||||       ||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  31274426 ttttaaaaggtct-tgcaatagaaattactctatacttttgtaaaaaaatgaaagttcaaatatagctagacaataaccaaaatccacggaaaactagaa 31274328  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5462871 - 5462815
Alignment:
Q  1 tctattgttttggttttta-tgtcaataattactttcttttgtaaatctataattgt 56  Q
    ||||||||||||||||||  |||||||| |||||||  ||||||||||||| |||||    
T  5462871 tctattgttttggtttttcgtgtcaatatttacttttctttgtaaatctattattgt 5462815  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 46767926 - 46767836
Alignment:
Q  3 tattgttttggtttttatgtcaataattactttcttttgtaaatctataattgtgttataagttgcatgtaaatgattgttcaaataacaa 93  Q
    ||||||||| ||||| |||||||||  || ||| ||||||||||||||| ||||  ||||| ||  ||||||||| |||||||||||||||    
T  46767926 tattgttttagttttcatgtcaatatctaattttttttgtaaatctatagttgtcctataaattatatgtaaatggttgttcaaataacaa 46767836  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 52430963 - 52431055
Alignment:
Q  1 tctattgttttggtttttatgtcaataattactttcttttgtaaatctataattgtgttataagttg-catgtaaatgattgttcaaataaca 92  Q
    |||||| ||||||||||| |||||||| |||||||  |||||||| |||||||||| | ||| |||| |||  ||||| ||||||||||||||    
T  52430963 tctattattttggtttttgtgtcaatacttacttttgtttgtaaagctataattgtctcataggttgtcatacaaatggttgttcaaataaca 52431055  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 43419955 - 43420006
Alignment:
Q  3 tattgttttggtttttatgtcaataattactttcttttgtaaatctataatt 54  Q
    |||||||||| |||||||||||||| ||| ||  ||||||||||||||||||    
T  43419955 tattgttttgttttttatgtcaatatttatttctttttgtaaatctataatt 43420006  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 43520951 - 43521035
Alignment:
Q  9 tttggtttttatgtcaataattactttcttttgtaaatctataattgtgttataagttg-catgtaaatgattgttcaaataaca 92  Q
    ||||||||| |||||||||  || |||  |||||||||  ||  |||| ||||| |||| |||||||||||||||||||||||||    
T  43520951 tttggttttcatgtcaatatatatttttctttgtaaattgatggttgtcttataggttgtcatgtaaatgattgttcaaataaca 43521035  T

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