View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15506_low_8 (Length: 218)
Name: NF15506_low_8
Description: NF15506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15506_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 8775261 - 8775465
Alignment:
| Q |
14 |
gatgaatggtgaaaacatggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaatacc |
113 |
Q |
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| T |
8775261 |
gatgaatggtgaaaatatggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaatacc |
8775360 |
T |
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| Q |
114 |
ggtgaagatgatgataaaatggatgaagatcatggaaatatggccgctttaattgataaaaatgatcatgtgatagagtgtgatgcagcagatgaagata |
213 |
Q |
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| T |
8775361 |
ggtgaagatgatgataaaatggatgaagatcatggaaatatggccgctttaattgataaaaatgatcatgtgatagagtgtgatgcagcagatgaagata |
8775460 |
T |
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| Q |
214 |
atgtg |
218 |
Q |
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| T |
8775461 |
atgtg |
8775465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 8775448 - 8775555
Alignment:
| Q |
75 |
gcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgataaaatggatgaagatcatggaaatatggccgctttaattgataaaa |
174 |
Q |
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| T |
8775448 |
gcagatgaagataatgtgaacaatttgagtgcaaataccggtgaagatgatgatgaaatgggtgaagatcatggaaatacggctgctttaattgataaaa |
8775547 |
T |
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| Q |
175 |
atgatcat |
182 |
Q |
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| T |
8775548 |
acgatcat |
8775555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 8775528 - 8775677
Alignment:
| Q |
32 |
ggctgctttaaatgctaaaaatgaccatacgatagatcttgatgcagatgaagataatgtaaacaatttgagtgcaaataccggtgaagatgatgataaa |
131 |
Q |
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| T |
8775528 |
ggctgctttaattgataaaaacgatcatactatagatgatgaggctgatgaagattatgcagaatttttgagtacatatactggtgaagaggttgatgaa |
8775627 |
T |
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| Q |
132 |
atggatgaagatcatggaaatatggccgctttaattgataaaaatgatca |
181 |
Q |
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| T |
8775628 |
acggatgaagattatggaaatacggatgctttaattgataaaaataatca |
8775677 |
T |
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