View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15507_high_3 (Length: 461)
Name: NF15507_high_3
Description: NF15507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15507_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 25 - 452
Target Start/End: Complemental strand, 42122500 - 42122072
Alignment:
| Q |
25 |
ctgttgcgtaatgtgatttgaacaaaccgctatttttcgtgatacataattaacaacactactgcaaatggctttatggtgcactcggttgcatactaca |
124 |
Q |
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| T |
42122500 |
ctgttgcgtaatgtgatttgaacaaaccgctatttttcgtgatacataattaacaacactaatgcaaatggctttatggtgcactcggttgcatactaca |
42122401 |
T |
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| Q |
125 |
gtcttaactaattgaatgatcttagtgttgcagattgaactatac----gcagattcagaagcttttgaattagctggtaattaaggtgacggtcacttg |
220 |
Q |
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| T |
42122400 |
gtcttaactaattgaatgatcttagtgttgcagattgaactatacgcaggcagattcagaagcttttgaattagctggtaattaaggtgacggtcacttg |
42122301 |
T |
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| Q |
221 |
gttgttattaagttgaagttcttatatatatatcnnnnnnngctacatgatctcactctcacaactttccatttttatttaagagagatttaggtaaaga |
320 |
Q |
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| T |
42122300 |
gttgttattaagttgaagttcttatatatcttt---tttttgctacatgatctcactctcacaactttccatttttatttaagagagatttaggtaaaga |
42122204 |
T |
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| Q |
321 |
aaaatgcacttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggtaaattatttcatgttctaatttaattaatg |
420 |
Q |
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| T |
42122203 |
aaaatgcacttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggtaaattatttcatgttctaatttaattaatg |
42122104 |
T |
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| Q |
421 |
caattacatctttgaaattaactgatctgtgc |
452 |
Q |
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| T |
42122103 |
caattacatctttgaaattaactgatctgtgc |
42122072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 41862991 - 41863069
Alignment:
| Q |
312 |
aggtaaagaaaaatgcacttctgatatgcaacctcaagtgtgatattgattggcttattggatgggtcttagctcaggta |
391 |
Q |
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| T |
41862991 |
aggtaaagaaaa-tgcacttctgatatgcaatcacaggagtgacattgattggcttattggatgggtcttggctcaggta |
41863069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 390
Target Start/End: Original strand, 36552981 - 36553020
Alignment:
| Q |
351 |
gtgatattgattggcttattggatgggtcttagctcaggt |
390 |
Q |
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| T |
36552981 |
gtgatattgattggcttgttggatgggttttagctcaggt |
36553020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 1668378 - 1668334
Alignment:
| Q |
40 |
atttgaacaaaccgctatttttcgtgatacataattaacaacact |
84 |
Q |
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| T |
1668378 |
atttgaacaaaccgctattttccgtgattcacaattgacaacact |
1668334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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