View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15507_low_1 (Length: 780)

Name: NF15507_low_1
Description: NF15507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15507_low_1
NF15507_low_1
[»] chr5 (1 HSPs)
chr5 (9-763)||(14544617-14545367)


Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 9 - 763
Target Start/End: Complemental strand, 14545367 - 14544617
Alignment:
Q  9 gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccaccaccagtgcagagatgactgagttgagtttcgatcttgttcaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  14545367 gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccacca---gtgcagagatgactgagttgagtttcgatcttgttcaga 14545271  T
Q  109 aacgttttagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa 208  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545270 aacgttgtagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa 14545171  T
Q  209 gttgcatttaatttatttattttcaataaaatnnnnnnn-taaatatatttttgtgttcgtgcgagcgaaacaaagaaagaaagaaaggatttaaggggg 307  Q
    ||||||||||||||||||||||||||||||||        || | |||||||||||||||||| ||||||||||||||||||||    ||||||||||||    
T  14545170 gttgcatttaatttatttattttcaataaaataaaaaaaatataaatatttttgtgttcgtgcaagcgaaacaaagaaagaaag----gatttaaggggg 14545075  T
Q  308 g-accataaattcatcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcttccaataa 406  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14545074 ggaccataaattcatcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcctccaataa 14544975  T
Q  407 acttgcaatttcaggaggagcaccaacctaaacaatttattagcaattgcagaaattcgttaaactagattaagaccgtcacgttgcagagtagttacga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14544974 acttgcaatttcaggaggagcaccaacctaaacaatttattagcaattatagaaattcgttaaactggattaagaccgtcacgttgcagagtagttacga 14544875  T
Q  507 tcaaacttagtttaattt-accttttgacaatcgatataggcttgaagaaggcgaggataataaggatgagaagcaattttagctttcatgatattagat 605  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14544874 tcagacttagtttaattttaccttttgacaatcgatataggcttgaagaaggcgagggtaataaggatgagaagcaattttagctttcatgatattagat 14544775  T
Q  606 gccacgtcatcttgaattccggcggaagaaggttccgccgccgtgaagatatcgtcggatccgaacataggaattcggttggttgatgaagtggtggaca 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544774 gccacgtcatcttgaattccggcggaagaaggttccgccgccgtgaagatatcgtcggatccgaacataggaattcggttggttgatgaagtggtggaca 14544675  T
Q  706 tgaggaaactgttgtagtctgccgggaagattagattctccggtgtcatcagggattt 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544674 tgaggaaactgttgtagtctgccgggaagattagattctccggtgtcatcagggattt 14544617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University