View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15507_low_7 (Length: 372)
Name: NF15507_low_7
Description: NF15507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15507_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 31900669 - 31900406
Alignment:
| Q |
20 |
tactaacgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatataacggcaaaatgcatac |
119 |
Q |
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| T |
31900669 |
tactaacaaaagtaaaataggtggaaggaaatgagaaataatatccaaagttagaagtatactaagaaaagaaacgcaaatataatgagaa--------- |
31900579 |
T |
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| Q |
120 |
ataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggtgaggataagtaaccgttaataaaaataaagtataacatttgtatcttga |
219 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
31900578 |
-taaaatgcacctcaaagtccaaaggtatattaatgtgttacatgtttggcgaggataagtaactgttaataaaaataaagtatatcatttgtatcttga |
31900480 |
T |
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| Q |
220 |
aaacaatattactatnnnnnnnttatgtaataataattagacaacgtttatttttctacatcaatataaccctt |
293 |
Q |
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| T |
31900479 |
aaacaatattactataaaaaaattatgtaacaataattagacaacgtttatttttctacatcaatataaccctt |
31900406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 888499 - 888230
Alignment:
| Q |
16 |
caattactaacgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatataacggcaaaatgc |
115 |
Q |
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| T |
888499 |
caattactagcgaaagtaaaataggttgaaggaaatgagaaataatatccaaagttagaagtatactaagaaaagaaatgcaaatataatgagaa----- |
888405 |
T |
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| Q |
116 |
atacataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggtgaggataagtaaccgttaataaaaataaagtataacatttgtatc |
215 |
Q |
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| T |
888404 |
-----taaaatgcacctcaaagttcaaaggtatattaatgtgttacatgtttggcgaggataagtaaccgttgataaaaataaagtatatcatttgtatc |
888310 |
T |
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| Q |
216 |
ttgaaaacaatattactatnnnnnnnttatgtaataataattagacaacgtttatttttctacatcaatataacccttca |
295 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
888309 |
ttgaaaacaatattactataaaaaaattatgtaacaataattagacaacatttatttttctacactaatataacccttca |
888230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 16066555 - 16066629
Alignment:
| Q |
28 |
aaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatat |
102 |
Q |
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| T |
16066555 |
aaagaaaaatatgtggaaggaattaagaaataatatccaaagttaaaagtataataagaaaagaaaggaaaatat |
16066629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 8398559 - 8398475
Alignment:
| Q |
18 |
attactaacgaaagtaaaataggtggaaggaaatgacaaataatatccaaagctagaagtatactaagaaaagaaacgcaaatat |
102 |
Q |
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||||||| | |||| ||||| ||||||| || ||| ||||||||||||||| || ||||||| |||||||||||| | |||||| |
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| T |
8398559 |
attactatcaaaagaaaaatctgtggaagaaattgagaaataatatccaaagttaaaagtataataagaaaagaaatgaaaatat |
8398475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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