View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15507_low_8 (Length: 254)
Name: NF15507_low_8
Description: NF15507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15507_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 925584 - 925349
Alignment:
| Q |
8 |
tagatgctttaaaattgaaaaagtatatgtatgtgtacgttttaaagtaacgatgctccactcatatgtatatgtatgtaatttcnnnnnnnctttaaac |
107 |
Q |
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| T |
925584 |
tagatgctttaaaattgaaaaagtatatgtatgtgtacgttttaaagtaacgatgctccactcatatgtat------gtaatttctttttttctttaaac |
925491 |
T |
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| Q |
108 |
agattttacatcctctaacnnnnnnncatattgtacatgacta-------atatgagatacttcgcatatacatttgaacatgcgtcctaggaagatcaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925490 |
agattttacatcctctaacaaaaaaacatattgtacatgactattgactaatatgagatacttcgcatatacatttgaacatgcgtcctaggaagatcaa |
925391 |
T |
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| Q |
201 |
atgtatacnnnnnnntggtgatgccttatccattctgtttct |
242 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
925390 |
atgtatacaaaaaaatggtgatgccttatccattctgtttct |
925349 |
T |
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